Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17240

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17235 and BPHYT_RS17240 overlap by 4 nucleotidesBPHYT_RS17240 and BPHYT_RS17245 overlap by 4 nucleotides BPHYT_RS17235: BPHYT_RS17235 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 3,904,022 to 3,905,140 _RS17235 BPHYT_RS17240: BPHYT_RS17240 - cell division protein FtsW, at 3,905,137 to 3,906,414 _RS17240 BPHYT_RS17245: BPHYT_RS17245 - UDP-N-acetylmuramoylalanine--D-glutamate ligase, at 3,906,411 to 3,907,925 _RS17245 Position (kb) 3905 3906 3907Strain fitness (log2 ratio) -3 -2 -1 0 1at 3906.261 kb on - strand, within BPHYT_RS17240

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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3,906,261 - BPHYT_RS17240 0.88 -2.8

Or see this region's nucleotide sequence