Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13850

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS13840 and BPHYT_RS13845 are separated by 274 nucleotidesBPHYT_RS13845 and BPHYT_RS13850 overlap by 4 nucleotidesBPHYT_RS13850 and BPHYT_RS13855 are separated by 824 nucleotides BPHYT_RS13840: BPHYT_RS13840 - DNA-dependent helicase, at 3,157,753 to 3,160,104 _RS13840 BPHYT_RS13845: BPHYT_RS13845 - transposase, at 3,160,379 to 3,160,681 _RS13845 BPHYT_RS13850: BPHYT_RS13850 - transposase, at 3,160,678 to 3,161,514 _RS13850 BPHYT_RS13855: BPHYT_RS13855 - valyl-tRNA synthetase, at 3,162,339 to 3,165,218 _RS13855 Position (kb) 3160 3161 3162Strain fitness (log2 ratio) -1 0 1 2 3at 3160.136 kb on + strandat 3160.136 kb on + strandat 3160.137 kb on - strandat 3160.137 kb on - strandat 3160.138 kb on + strandat 3160.139 kb on - strandat 3160.139 kb on - strandat 3160.346 kb on - strandat 3161.620 kb on + strandat 3162.121 kb on + strandat 3162.122 kb on - strandat 3162.137 kb on - strandat 3162.137 kb on - strandat 3162.297 kb on - strandat 3162.298 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
3,160,136 + -0.7
3,160,136 + -0.3
3,160,137 - +0.8
3,160,137 - -0.3
3,160,138 + +0.5
3,160,139 - +0.2
3,160,139 - +0.8
3,160,346 - -0.3
3,161,620 + +1.2
3,162,121 + +0.7
3,162,122 - -0.1
3,162,137 - +2.8
3,162,137 - +0.3
3,162,297 - +0.7
3,162,298 + +0.3

Or see this region's nucleotide sequence