Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08610 and BPHYT_RS08615 are separated by 176 nucleotides BPHYT_RS08615 and BPHYT_RS08620 are separated by 390 nucleotides BPHYT_RS08620 and BPHYT_RS08625 are separated by 136 nucleotides
BPHYT_RS08610: BPHYT_RS08610 - hypothetical protein, at 1,963,849 to 1,964,127
_RS08610
BPHYT_RS08615: BPHYT_RS08615 - hypothetical protein, at 1,964,304 to 1,964,588
_RS08615
BPHYT_RS08620: BPHYT_RS08620 - epimerase, at 1,964,979 to 1,965,977
_RS08620
BPHYT_RS08625: BPHYT_RS08625 - TetR family transcriptional regulator, at 1,966,114 to 1,967,028
_RS08625
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -1
0
1 at 1964.010 kb on + strand, within BPHYT_RS08610 at 1964.011 kb on - strand, within BPHYT_RS08610 at 1964.099 kb on - strand, within BPHYT_RS08610 at 1964.232 kb on - strand at 1964.439 kb on + strand, within BPHYT_RS08615 at 1964.631 kb on + strand at 1965.146 kb on - strand, within BPHYT_RS08620 at 1965.251 kb on - strand, within BPHYT_RS08620 at 1965.316 kb on + strand, within BPHYT_RS08620 at 1965.316 kb on + strand, within BPHYT_RS08620 at 1965.317 kb on - strand, within BPHYT_RS08620 at 1965.317 kb on - strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.370 kb on + strand, within BPHYT_RS08620 at 1965.371 kb on - strand, within BPHYT_RS08620 at 1965.478 kb on + strand, within BPHYT_RS08620 at 1965.733 kb on + strand, within BPHYT_RS08620 at 1965.981 kb on + strand at 1965.981 kb on + strand at 1966.400 kb on - strand, within BPHYT_RS08625 at 1966.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,964,010 + BPHYT_RS08610 0.58 -0.1 1,964,011 - BPHYT_RS08610 0.58 -0.2 1,964,099 - BPHYT_RS08610 0.90 +0.1 1,964,232 - -0.5 1,964,439 + BPHYT_RS08615 0.47 +1.2 1,964,631 + +0.5 1,965,146 - BPHYT_RS08620 0.17 -0.9 1,965,251 - BPHYT_RS08620 0.27 +0.6 1,965,316 + BPHYT_RS08620 0.34 -1.5 1,965,316 + BPHYT_RS08620 0.34 -0.0 1,965,317 - BPHYT_RS08620 0.34 +0.0 1,965,317 - BPHYT_RS08620 0.34 +0.1 1,965,370 + BPHYT_RS08620 0.39 +1.2 1,965,370 + BPHYT_RS08620 0.39 +0.5 1,965,370 + BPHYT_RS08620 0.39 -0.1 1,965,371 - BPHYT_RS08620 0.39 -0.0 1,965,478 + BPHYT_RS08620 0.50 +0.5 1,965,733 + BPHYT_RS08620 0.75 -0.4 1,965,981 + -0.5 1,965,981 + -1.6 1,966,400 - BPHYT_RS08625 0.31 +1.7 1,966,956 + +0.1
Or see this region's nucleotide sequence