Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08590 and BPHYT_RS08595 are separated by 4 nucleotides BPHYT_RS08595 and BPHYT_RS08600 are separated by 31 nucleotides BPHYT_RS08600 and BPHYT_RS08605 are separated by 72 nucleotides BPHYT_RS08605 and BPHYT_RS08610 are separated by 287 nucleotides BPHYT_RS08610 and BPHYT_RS08615 are separated by 176 nucleotides
BPHYT_RS08590: BPHYT_RS08590 - hypothetical protein, at 1,962,030 to 1,962,527
_RS08590
BPHYT_RS08595: BPHYT_RS08595 - multidrug transporter, at 1,962,532 to 1,962,870
_RS08595
BPHYT_RS08600: BPHYT_RS08600 - hypothetical protein, at 1,962,902 to 1,963,297
_RS08600
BPHYT_RS08605: BPHYT_RS08605 - hypothetical protein, at 1,963,370 to 1,963,561
_RS08605
BPHYT_RS08610: BPHYT_RS08610 - hypothetical protein, at 1,963,849 to 1,964,127
_RS08610
BPHYT_RS08615: BPHYT_RS08615 - hypothetical protein, at 1,964,304 to 1,964,588
_RS08615
Position (kb) 1963
1964 Strain fitness (log2 ratio) -1
0
1
2 at 1962.498 kb on + strand at 1962.499 kb on - strand at 1962.670 kb on + strand, within BPHYT_RS08595 at 1962.671 kb on - strand, within BPHYT_RS08595 at 1962.803 kb on + strand, within BPHYT_RS08595 at 1962.880 kb on + strand at 1962.903 kb on + strand at 1962.903 kb on + strand at 1962.904 kb on - strand at 1962.904 kb on - strand at 1962.904 kb on - strand at 1963.012 kb on - strand, within BPHYT_RS08600 at 1963.561 kb on + strand at 1963.562 kb on - strand at 1963.684 kb on + strand at 1963.685 kb on - strand at 1963.705 kb on + strand at 1963.705 kb on + strand at 1963.709 kb on + strand at 1963.710 kb on - strand at 1963.830 kb on + strand at 1963.885 kb on + strand, within BPHYT_RS08610 at 1963.886 kb on - strand, within BPHYT_RS08610 at 1963.886 kb on - strand, within BPHYT_RS08610 at 1963.960 kb on + strand, within BPHYT_RS08610 at 1963.960 kb on + strand, within BPHYT_RS08610 at 1963.961 kb on - strand, within BPHYT_RS08610 at 1964.010 kb on + strand, within BPHYT_RS08610 at 1964.011 kb on - strand, within BPHYT_RS08610 at 1964.099 kb on - strand, within BPHYT_RS08610 at 1964.232 kb on - strand at 1964.439 kb on + strand, within BPHYT_RS08615
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,962,498 + -0.2 1,962,499 - -1.4 1,962,670 + BPHYT_RS08595 0.41 -0.5 1,962,671 - BPHYT_RS08595 0.41 -0.4 1,962,803 + BPHYT_RS08595 0.80 +2.1 1,962,880 + -1.3 1,962,903 + +2.5 1,962,903 + -0.6 1,962,904 - -0.5 1,962,904 - -0.8 1,962,904 - -0.7 1,963,012 - BPHYT_RS08600 0.28 +1.3 1,963,561 + -0.0 1,963,562 - -0.0 1,963,684 + +0.4 1,963,685 - -0.5 1,963,705 + +0.8 1,963,705 + -0.1 1,963,709 + -1.4 1,963,710 - +0.2 1,963,830 + -0.8 1,963,885 + BPHYT_RS08610 0.13 -0.1 1,963,886 - BPHYT_RS08610 0.13 -0.3 1,963,886 - BPHYT_RS08610 0.13 +0.4 1,963,960 + BPHYT_RS08610 0.40 -1.5 1,963,960 + BPHYT_RS08610 0.40 -0.1 1,963,961 - BPHYT_RS08610 0.40 +0.3 1,964,010 + BPHYT_RS08610 0.58 -0.1 1,964,011 - BPHYT_RS08610 0.58 -0.2 1,964,099 - BPHYT_RS08610 0.90 +0.1 1,964,232 - -0.5 1,964,439 + BPHYT_RS08615 0.47 +1.2
Or see this region's nucleotide sequence