Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04585 and BPHYT_RS04590 are separated by 32 nucleotides BPHYT_RS04590 and BPHYT_RS04595 overlap by 4 nucleotides BPHYT_RS04595 and BPHYT_RS04600 are separated by 15 nucleotides
BPHYT_RS04585: BPHYT_RS04585 - hypothetical protein, at 1,062,796 to 1,063,044
_RS04585
BPHYT_RS04590: BPHYT_RS04590 - virulence protein SciE type, at 1,063,077 to 1,063,949
_RS04590
BPHYT_RS04595: BPHYT_RS04595 - cytoplasmic protein, at 1,063,946 to 1,064,482
_RS04595
BPHYT_RS04600: BPHYT_RS04600 - type VI secretion protein, at 1,064,498 to 1,066,387
_RS04600
Position (kb) 1063
1064 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1062.391 kb on + strand at 1062.391 kb on + strand at 1062.391 kb on + strand at 1062.571 kb on - strand at 1062.608 kb on - strand at 1062.648 kb on + strand at 1062.688 kb on + strand at 1062.688 kb on + strand at 1062.688 kb on + strand at 1062.689 kb on - strand at 1062.825 kb on + strand, within BPHYT_RS04585 at 1063.170 kb on - strand, within BPHYT_RS04590 at 1063.216 kb on + strand, within BPHYT_RS04590 at 1063.217 kb on - strand, within BPHYT_RS04590 at 1063.217 kb on - strand, within BPHYT_RS04590 at 1063.217 kb on - strand, within BPHYT_RS04590 at 1063.220 kb on + strand, within BPHYT_RS04590 at 1063.221 kb on - strand, within BPHYT_RS04590 at 1063.221 kb on - strand, within BPHYT_RS04590 at 1063.221 kb on - strand, within BPHYT_RS04590 at 1063.376 kb on - strand, within BPHYT_RS04590 at 1063.400 kb on - strand, within BPHYT_RS04590 at 1063.571 kb on - strand, within BPHYT_RS04590 at 1063.646 kb on - strand, within BPHYT_RS04590 at 1064.318 kb on - strand, within BPHYT_RS04595 at 1064.363 kb on + strand, within BPHYT_RS04595 at 1064.364 kb on - strand, within BPHYT_RS04595 at 1064.520 kb on - strand at 1064.523 kb on - strand at 1064.540 kb on + strand at 1064.540 kb on + strand at 1064.540 kb on + strand at 1064.541 kb on - strand at 1064.541 kb on - strand at 1064.541 kb on - strand at 1064.544 kb on + strand at 1064.545 kb on - strand at 1064.724 kb on + strand, within BPHYT_RS04600 at 1064.744 kb on + strand, within BPHYT_RS04600 at 1064.744 kb on + strand, within BPHYT_RS04600 at 1064.744 kb on + strand, within BPHYT_RS04600 at 1064.745 kb on - strand, within BPHYT_RS04600 at 1064.745 kb on - strand, within BPHYT_RS04600 at 1064.745 kb on - strand, within BPHYT_RS04600 at 1064.745 kb on - strand, within BPHYT_RS04600 at 1064.783 kb on + strand, within BPHYT_RS04600 at 1064.784 kb on - strand, within BPHYT_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,062,391 + -0.1 1,062,391 + +1.4 1,062,391 + -0.8 1,062,571 - -1.9 1,062,608 - -0.6 1,062,648 + +0.3 1,062,688 + -0.8 1,062,688 + +0.5 1,062,688 + +0.3 1,062,689 - -2.3 1,062,825 + BPHYT_RS04585 0.12 -0.3 1,063,170 - BPHYT_RS04590 0.11 +0.2 1,063,216 + BPHYT_RS04590 0.16 -0.0 1,063,217 - BPHYT_RS04590 0.16 -0.6 1,063,217 - BPHYT_RS04590 0.16 -0.3 1,063,217 - BPHYT_RS04590 0.16 +2.5 1,063,220 + BPHYT_RS04590 0.16 +0.2 1,063,221 - BPHYT_RS04590 0.16 -2.0 1,063,221 - BPHYT_RS04590 0.16 +0.3 1,063,221 - BPHYT_RS04590 0.16 -0.7 1,063,376 - BPHYT_RS04590 0.34 -0.4 1,063,400 - BPHYT_RS04590 0.37 -0.5 1,063,571 - BPHYT_RS04590 0.57 -1.5 1,063,646 - BPHYT_RS04590 0.65 -0.7 1,064,318 - BPHYT_RS04595 0.69 -0.0 1,064,363 + BPHYT_RS04595 0.78 -1.5 1,064,364 - BPHYT_RS04595 0.78 -1.7 1,064,520 - -0.4 1,064,523 - -1.4 1,064,540 + +0.1 1,064,540 + +0.3 1,064,540 + +0.2 1,064,541 - -0.0 1,064,541 - -0.2 1,064,541 - +3.6 1,064,544 + +0.5 1,064,545 - +1.3 1,064,724 + BPHYT_RS04600 0.12 +0.7 1,064,744 + BPHYT_RS04600 0.13 +0.6 1,064,744 + BPHYT_RS04600 0.13 -1.4 1,064,744 + BPHYT_RS04600 0.13 -1.5 1,064,745 - BPHYT_RS04600 0.13 +0.4 1,064,745 - BPHYT_RS04600 0.13 -0.4 1,064,745 - BPHYT_RS04600 0.13 -0.7 1,064,745 - BPHYT_RS04600 0.13 -0.6 1,064,783 + BPHYT_RS04600 0.15 -0.8 1,064,784 - BPHYT_RS04600 0.15 -0.9
Or see this region's nucleotide sequence