Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03625 and BPHYT_RS03630 overlap by 8 nucleotides BPHYT_RS03630 and BPHYT_RS03635 are separated by 72 nucleotides BPHYT_RS03635 and BPHYT_RS03640 are separated by 71 nucleotides
BPHYT_RS03625: BPHYT_RS03625 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 824,220 to 824,906
_RS03625
BPHYT_RS03630: BPHYT_RS03630 - DnaA regulatory inactivator Hda, at 824,899 to 825,669
_RS03630
BPHYT_RS03635: BPHYT_RS03635 - ABC transporter permease, at 825,742 to 826,818
_RS03635
BPHYT_RS03640: BPHYT_RS03640 - phosphoribosylformylglycinamidine cyclo-ligase, at 826,890 to 827,957
_RS03640
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.919 kb on + strand at 825.673 kb on - strand at 825.729 kb on - strand at 825.751 kb on - strand at 825.771 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand at 825.963 kb on - strand, within BPHYT_RS03635 at 825.990 kb on - strand, within BPHYT_RS03635 at 826.056 kb on - strand, within BPHYT_RS03635 at 826.137 kb on - strand, within BPHYT_RS03635 at 826.182 kb on - strand, within BPHYT_RS03635 at 826.296 kb on - strand, within BPHYT_RS03635 at 827.241 kb on + strand, within BPHYT_RS03640 at 827.364 kb on + strand, within BPHYT_RS03640 at 827.427 kb on - strand, within BPHYT_RS03640 at 827.597 kb on + strand, within BPHYT_RS03640 at 827.598 kb on - strand, within BPHYT_RS03640 at 827.684 kb on + strand, within BPHYT_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 824,764 + BPHYT_RS03625 0.79 +0.1 824,764 + BPHYT_RS03625 0.79 +1.2 824,919 + +1.0 825,673 - +1.8 825,729 - +0.7 825,751 - -0.8 825,771 - -0.4 825,833 - -0.3 825,833 - +0.0 825,833 - +0.1 825,963 - BPHYT_RS03635 0.21 +1.0 825,990 - BPHYT_RS03635 0.23 +1.9 826,056 - BPHYT_RS03635 0.29 +1.5 826,137 - BPHYT_RS03635 0.37 +0.2 826,182 - BPHYT_RS03635 0.41 +0.2 826,296 - BPHYT_RS03635 0.51 +1.9 827,241 + BPHYT_RS03640 0.33 +0.2 827,364 + BPHYT_RS03640 0.44 -1.8 827,427 - BPHYT_RS03640 0.50 +0.2 827,597 + BPHYT_RS03640 0.66 +1.2 827,598 - BPHYT_RS03640 0.66 +1.2 827,684 + BPHYT_RS03640 0.74 +0.2
Or see this region's nucleotide sequence