Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03510 and BPHYT_RS03515 are separated by 69 nucleotides BPHYT_RS03515 and BPHYT_RS03520 are separated by 216 nucleotides BPHYT_RS03520 and BPHYT_RS03525 are separated by 73 nucleotides
BPHYT_RS03510: BPHYT_RS03510 - FAD-binding protein, at 791,409 to 792,902
_RS03510
BPHYT_RS03515: BPHYT_RS03515 - D-lactate dehydrogenase, at 792,972 to 794,387
_RS03515
BPHYT_RS03520: BPHYT_RS03520 - ATP--cobalamin adenosyltransferase, at 794,604 to 795,158
_RS03520
BPHYT_RS03525: BPHYT_RS03525 - XRE family transcriptional regulator, at 795,232 to 795,564
_RS03525
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -2
-1
0
1 at 792.033 kb on + strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.034 kb on - strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.377 kb on + strand, within BPHYT_RS03510 at 792.394 kb on + strand, within BPHYT_RS03510 at 792.479 kb on - strand, within BPHYT_RS03510 at 792.482 kb on - strand, within BPHYT_RS03510 at 792.491 kb on - strand, within BPHYT_RS03510 at 792.556 kb on + strand, within BPHYT_RS03510 at 792.870 kb on + strand at 792.870 kb on + strand at 792.871 kb on - strand at 792.966 kb on + strand at 792.966 kb on + strand at 792.966 kb on + strand at 793.037 kb on + strand at 793.626 kb on + strand, within BPHYT_RS03515 at 793.720 kb on + strand, within BPHYT_RS03515 at 793.793 kb on - strand, within BPHYT_RS03515 at 793.897 kb on - strand, within BPHYT_RS03515 at 793.990 kb on - strand, within BPHYT_RS03515 at 794.168 kb on - strand, within BPHYT_RS03515 at 794.332 kb on - strand at 794.401 kb on + strand at 794.401 kb on + strand at 794.485 kb on + strand at 794.486 kb on - strand at 794.487 kb on + strand at 794.590 kb on - strand at 795.054 kb on + strand, within BPHYT_RS03520 at 795.054 kb on + strand, within BPHYT_RS03520 at 795.156 kb on + strand at 795.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 792,033 + BPHYT_RS03510 0.42 -0.3 792,034 - BPHYT_RS03510 0.42 +0.8 792,034 - BPHYT_RS03510 0.42 +1.1 792,034 - BPHYT_RS03510 0.42 +0.2 792,377 + BPHYT_RS03510 0.65 +1.0 792,377 + BPHYT_RS03510 0.65 +0.6 792,394 + BPHYT_RS03510 0.66 +0.5 792,479 - BPHYT_RS03510 0.72 +1.0 792,482 - BPHYT_RS03510 0.72 +0.9 792,491 - BPHYT_RS03510 0.72 -0.3 792,556 + BPHYT_RS03510 0.77 +0.3 792,870 + +0.3 792,870 + -0.4 792,871 - +1.0 792,966 + +0.1 792,966 + -0.9 792,966 + +0.4 793,037 + -0.0 793,626 + BPHYT_RS03515 0.46 +0.3 793,720 + BPHYT_RS03515 0.53 +0.7 793,793 - BPHYT_RS03515 0.58 +0.9 793,897 - BPHYT_RS03515 0.65 -0.0 793,990 - BPHYT_RS03515 0.72 -2.4 794,168 - BPHYT_RS03515 0.84 +0.3 794,332 - +1.6 794,401 + +1.5 794,401 + +0.5 794,485 + -0.1 794,486 - +0.0 794,487 + -0.1 794,590 - -1.2 795,054 + BPHYT_RS03520 0.81 -0.7 795,054 + BPHYT_RS03520 0.81 -0.6 795,156 + -2.5 795,175 - -0.2
Or see this region's nucleotide sequence