Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01915 and BPHYT_RS01920 are separated by 61 nucleotides BPHYT_RS01920 and BPHYT_RS01925 are separated by 90 nucleotides BPHYT_RS01925 and BPHYT_RS01930 overlap by 4 nucleotides
BPHYT_RS01915: BPHYT_RS01915 - cation diffusion facilitator family transporter, at 436,231 to 437,487
_RS01915
BPHYT_RS01920: BPHYT_RS01920 - AsnC family transcriptional regulator, at 437,549 to 438,007
_RS01920
BPHYT_RS01925: BPHYT_RS01925 - exonuclease, at 438,098 to 438,727
_RS01925
BPHYT_RS01930: BPHYT_RS01930 - hypothetical protein, at 438,724 to 439,368
_RS01930
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.596 kb on + strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.597 kb on - strand, within BPHYT_RS01915 at 436.620 kb on - strand, within BPHYT_RS01915 at 436.655 kb on - strand, within BPHYT_RS01915 at 436.756 kb on - strand, within BPHYT_RS01915 at 436.926 kb on + strand, within BPHYT_RS01915 at 437.038 kb on + strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.039 kb on - strand, within BPHYT_RS01915 at 437.152 kb on - strand, within BPHYT_RS01915 at 437.152 kb on - strand, within BPHYT_RS01915 at 437.230 kb on + strand, within BPHYT_RS01915 at 437.258 kb on + strand, within BPHYT_RS01915 at 437.259 kb on - strand at 437.372 kb on + strand at 437.372 kb on + strand at 437.373 kb on - strand at 437.373 kb on - strand at 437.655 kb on + strand, within BPHYT_RS01920 at 437.656 kb on - strand, within BPHYT_RS01920 at 437.691 kb on + strand, within BPHYT_RS01920 at 437.691 kb on + strand, within BPHYT_RS01920 at 437.692 kb on - strand, within BPHYT_RS01920 at 437.716 kb on - strand at 437.797 kb on + strand, within BPHYT_RS01920 at 437.797 kb on + strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.798 kb on - strand, within BPHYT_RS01920 at 437.996 kb on - strand at 438.095 kb on + strand at 438.096 kb on - strand at 438.099 kb on + strand at 438.390 kb on + strand, within BPHYT_RS01925 at 438.391 kb on - strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.400 kb on + strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.401 kb on - strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.402 kb on + strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.403 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925 at 438.475 kb on - strand, within BPHYT_RS01925 at 438.636 kb on + strand, within BPHYT_RS01925 at 438.707 kb on + strand at 438.707 kb on + strand at 438.707 kb on + strand at 438.707 kb on + strand at 438.708 kb on - strand at 438.708 kb on - strand at 438.708 kb on - strand at 438.708 kb on - strand at 438.708 kb on - strand at 438.708 kb on - strand at 438.712 kb on - strand at 438.712 kb on - strand at 438.750 kb on - strand at 438.780 kb on + strand at 438.781 kb on - strand at 438.972 kb on + strand, within BPHYT_RS01930 at 438.972 kb on + strand, within BPHYT_RS01930 at 438.973 kb on - strand, within BPHYT_RS01930 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.989 kb on + strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930 at 438.990 kb on - strand, within BPHYT_RS01930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 436,596 + BPHYT_RS01915 0.29 -0.3 436,596 + BPHYT_RS01915 0.29 -0.5 436,597 - BPHYT_RS01915 0.29 -0.4 436,597 - BPHYT_RS01915 0.29 -1.5 436,597 - BPHYT_RS01915 0.29 -0.6 436,597 - BPHYT_RS01915 0.29 -1.0 436,620 - BPHYT_RS01915 0.31 -0.4 436,655 - BPHYT_RS01915 0.34 +0.7 436,756 - BPHYT_RS01915 0.42 -0.4 436,926 + BPHYT_RS01915 0.55 +0.2 437,038 + BPHYT_RS01915 0.64 -0.3 437,039 - BPHYT_RS01915 0.64 -0.2 437,039 - BPHYT_RS01915 0.64 -0.0 437,039 - BPHYT_RS01915 0.64 -0.0 437,039 - BPHYT_RS01915 0.64 -0.7 437,039 - BPHYT_RS01915 0.64 -0.5 437,039 - BPHYT_RS01915 0.64 -0.5 437,152 - BPHYT_RS01915 0.73 -0.5 437,152 - BPHYT_RS01915 0.73 +0.2 437,230 + BPHYT_RS01915 0.79 -0.1 437,258 + BPHYT_RS01915 0.82 -0.7 437,259 - +1.3 437,372 + -0.2 437,372 + +0.1 437,373 - -0.9 437,373 - -0.2 437,655 + BPHYT_RS01920 0.23 +0.4 437,656 - BPHYT_RS01920 0.23 -1.8 437,691 + BPHYT_RS01920 0.31 -1.3 437,691 + BPHYT_RS01920 0.31 -1.7 437,692 - BPHYT_RS01920 0.31 -0.7 437,716 - -1.2 437,797 + BPHYT_RS01920 0.54 -3.5 437,797 + BPHYT_RS01920 0.54 -1.6 437,798 - BPHYT_RS01920 0.54 -2.1 437,798 - BPHYT_RS01920 0.54 -0.8 437,798 - BPHYT_RS01920 0.54 -0.8 437,798 - BPHYT_RS01920 0.54 -3.5 437,798 - BPHYT_RS01920 0.54 -1.4 437,996 - -1.9 438,095 + -1.0 438,096 - -0.3 438,099 + -0.6 438,390 + BPHYT_RS01925 0.46 -0.4 438,391 - BPHYT_RS01925 0.47 +0.3 438,400 + BPHYT_RS01925 0.48 -2.4 438,400 + BPHYT_RS01925 0.48 +0.1 438,400 + BPHYT_RS01925 0.48 -0.6 438,400 + BPHYT_RS01925 0.48 -0.4 438,400 + BPHYT_RS01925 0.48 -0.1 438,400 + BPHYT_RS01925 0.48 -0.9 438,400 + BPHYT_RS01925 0.48 -0.1 438,401 - BPHYT_RS01925 0.48 -1.5 438,401 - BPHYT_RS01925 0.48 -0.8 438,401 - BPHYT_RS01925 0.48 -1.5 438,401 - BPHYT_RS01925 0.48 -1.2 438,401 - BPHYT_RS01925 0.48 -0.1 438,401 - BPHYT_RS01925 0.48 -0.7 438,401 - BPHYT_RS01925 0.48 -0.6 438,401 - BPHYT_RS01925 0.48 +0.7 438,401 - BPHYT_RS01925 0.48 -1.1 438,401 - BPHYT_RS01925 0.48 -0.4 438,402 + BPHYT_RS01925 0.48 -0.3 438,402 + BPHYT_RS01925 0.48 +0.0 438,402 + BPHYT_RS01925 0.48 +0.9 438,402 + BPHYT_RS01925 0.48 -0.6 438,402 + BPHYT_RS01925 0.48 -1.2 438,402 + BPHYT_RS01925 0.48 +2.2 438,402 + BPHYT_RS01925 0.48 +0.8 438,402 + BPHYT_RS01925 0.48 -0.1 438,403 - BPHYT_RS01925 0.48 -1.7 438,403 - BPHYT_RS01925 0.48 -1.1 438,403 - BPHYT_RS01925 0.48 -0.9 438,403 - BPHYT_RS01925 0.48 -0.6 438,403 - BPHYT_RS01925 0.48 +0.1 438,403 - BPHYT_RS01925 0.48 -1.0 438,403 - BPHYT_RS01925 0.48 -0.1 438,403 - BPHYT_RS01925 0.48 -0.5 438,403 - BPHYT_RS01925 0.48 -1.3 438,403 - BPHYT_RS01925 0.48 -0.6 438,403 - BPHYT_RS01925 0.48 -1.2 438,475 - BPHYT_RS01925 0.60 -0.8 438,475 - BPHYT_RS01925 0.60 -0.6 438,475 - BPHYT_RS01925 0.60 -0.2 438,636 + BPHYT_RS01925 0.85 +0.1 438,707 + -0.2 438,707 + +0.1 438,707 + +0.6 438,707 + -0.4 438,708 - -0.1 438,708 - -0.6 438,708 - -0.4 438,708 - -0.5 438,708 - +0.9 438,708 - -0.1 438,712 - -0.6 438,712 - +1.4 438,750 - +0.1 438,780 + +0.6 438,781 - +0.6 438,972 + BPHYT_RS01930 0.38 +0.1 438,972 + BPHYT_RS01930 0.38 -0.5 438,973 - BPHYT_RS01930 0.39 +0.6 438,989 + BPHYT_RS01930 0.41 -0.6 438,989 + BPHYT_RS01930 0.41 +0.1 438,989 + BPHYT_RS01930 0.41 +0.4 438,990 - BPHYT_RS01930 0.41 -0.3 438,990 - BPHYT_RS01930 0.41 +0.6 438,990 - BPHYT_RS01930 0.41 -0.1 438,990 - BPHYT_RS01930 0.41 +0.7
Or see this region's nucleotide sequence