Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00550

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00545 and BPHYT_RS00550 are separated by 301 nucleotidesBPHYT_RS00550 and BPHYT_RS00555 are separated by 772 nucleotides BPHYT_RS00545: BPHYT_RS00545 - LysR family transcriptional regulator, at 131,514 to 132,455 _RS00545 BPHYT_RS00550: BPHYT_RS00550 - excinuclease ABC subunit B, at 132,757 to 134,736 _RS00550 BPHYT_RS00555: BPHYT_RS00555 - hypothetical protein, at 135,509 to 135,910 _RS00555 Position (kb) 132 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1at 131.777 kb on + strand, within BPHYT_RS00545at 131.804 kb on - strand, within BPHYT_RS00545at 131.804 kb on - strand, within BPHYT_RS00545at 131.880 kb on - strand, within BPHYT_RS00545at 131.949 kb on + strand, within BPHYT_RS00545at 132.047 kb on + strand, within BPHYT_RS00545at 132.047 kb on + strand, within BPHYT_RS00545at 132.148 kb on - strand, within BPHYT_RS00545at 132.443 kb on + strandat 132.516 kb on + strandat 132.526 kb on + strandat 132.537 kb on - strandat 132.608 kb on - strandat 132.608 kb on - strandat 132.610 kb on - strandat 132.610 kb on - strandat 132.768 kb on + strandat 132.792 kb on + strandat 132.793 kb on - strandat 132.843 kb on - strandat 132.901 kb on - strandat 132.979 kb on + strand, within BPHYT_RS00550at 133.384 kb on + strand, within BPHYT_RS00550at 133.385 kb on - strand, within BPHYT_RS00550at 133.386 kb on + strand, within BPHYT_RS00550at 133.387 kb on - strand, within BPHYT_RS00550at 133.481 kb on - strand, within BPHYT_RS00550at 133.481 kb on - strand, within BPHYT_RS00550at 133.547 kb on + strand, within BPHYT_RS00550at 133.685 kb on - strand, within BPHYT_RS00550at 133.685 kb on - strand, within BPHYT_RS00550at 133.694 kb on - strand, within BPHYT_RS00550at 133.741 kb on + strand, within BPHYT_RS00550at 133.810 kb on + strand, within BPHYT_RS00550at 133.813 kb on - strand, within BPHYT_RS00550at 133.813 kb on - strand, within BPHYT_RS00550at 134.052 kb on + strand, within BPHYT_RS00550at 134.052 kb on + strand, within BPHYT_RS00550at 134.053 kb on - strand, within BPHYT_RS00550at 134.199 kb on - strand, within BPHYT_RS00550at 134.819 kb on + strandat 134.996 kb on + strandat 134.997 kb on - strandat 134.997 kb on - strandat 135.114 kb on - strandat 135.120 kb on + strandat 135.121 kb on - strandat 135.121 kb on - strandat 135.121 kb on - strandat 135.121 kb on - strandat 135.124 kb on + strandat 135.124 kb on + strandat 135.124 kb on + strandat 135.125 kb on - strandat 135.125 kb on - strandat 135.125 kb on - strandat 135.125 kb on - strandat 135.459 kb on - strandat 135.463 kb on - strandat 135.526 kb on - strandat 135.558 kb on + strand, within BPHYT_RS00555at 135.558 kb on + strand, within BPHYT_RS00555at 135.559 kb on - strand, within BPHYT_RS00555at 135.665 kb on - strand, within BPHYT_RS00555at 135.681 kb on + strand, within BPHYT_RS00555at 135.693 kb on - strand, within BPHYT_RS00555at 135.693 kb on - strand, within BPHYT_RS00555at 135.693 kb on - strand, within BPHYT_RS00555

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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131,777 + BPHYT_RS00545 0.28 -0.2
131,804 - BPHYT_RS00545 0.31 -0.6
131,804 - BPHYT_RS00545 0.31 -0.2
131,880 - BPHYT_RS00545 0.39 +0.5
131,949 + BPHYT_RS00545 0.46 +1.0
132,047 + BPHYT_RS00545 0.57 -1.1
132,047 + BPHYT_RS00545 0.57 -0.6
132,148 - BPHYT_RS00545 0.67 -0.4
132,443 + -0.3
132,516 + +0.4
132,526 + +0.1
132,537 - -0.5
132,608 - -0.3
132,608 - +0.3
132,610 - -0.0
132,610 - -0.3
132,768 + -0.8
132,792 + -1.5
132,793 - +0.7
132,843 - -0.5
132,901 - -0.2
132,979 + BPHYT_RS00550 0.11 -0.8
133,384 + BPHYT_RS00550 0.32 -3.4
133,385 - BPHYT_RS00550 0.32 -0.8
133,386 + BPHYT_RS00550 0.32 -0.6
133,387 - BPHYT_RS00550 0.32 -1.3
133,481 - BPHYT_RS00550 0.37 -1.3
133,481 - BPHYT_RS00550 0.37 -1.0
133,547 + BPHYT_RS00550 0.40 -1.5
133,685 - BPHYT_RS00550 0.47 -1.6
133,685 - BPHYT_RS00550 0.47 -1.0
133,694 - BPHYT_RS00550 0.47 -1.5
133,741 + BPHYT_RS00550 0.50 -2.3
133,810 + BPHYT_RS00550 0.53 -0.0
133,813 - BPHYT_RS00550 0.53 -2.0
133,813 - BPHYT_RS00550 0.53 -1.4
134,052 + BPHYT_RS00550 0.65 -1.0
134,052 + BPHYT_RS00550 0.65 -0.7
134,053 - BPHYT_RS00550 0.65 -1.0
134,199 - BPHYT_RS00550 0.73 -1.4
134,819 + -0.6
134,996 + -0.5
134,997 - -0.3
134,997 - -1.1
135,114 - -1.7
135,120 + -1.3
135,121 - -1.2
135,121 - -1.8
135,121 - -1.8
135,121 - -0.4
135,124 + -0.1
135,124 + -2.2
135,124 + +1.4
135,125 - +0.4
135,125 - -0.1
135,125 - -0.6
135,125 - -0.7
135,459 - +0.5
135,463 - +0.9
135,526 - -1.3
135,558 + BPHYT_RS00555 0.12 +0.3
135,558 + BPHYT_RS00555 0.12 -0.1
135,559 - BPHYT_RS00555 0.12 -0.3
135,665 - BPHYT_RS00555 0.39 -1.0
135,681 + BPHYT_RS00555 0.43 -0.0
135,693 - BPHYT_RS00555 0.46 -1.1
135,693 - BPHYT_RS00555 0.46 -0.4
135,693 - BPHYT_RS00555 0.46 +0.1

Or see this region's nucleotide sequence