Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22690 and BPHYT_RS22695 are separated by 70 nucleotides BPHYT_RS22695 and BPHYT_RS22700 are separated by 94 nucleotides
BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295
_RS22690
BPHYT_RS22695: BPHYT_RS22695 - TetR family transcriptional regulator, at 647,366 to 648,061
_RS22695
BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436
_RS22700
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1 at 646.396 kb on + strand, within BPHYT_RS22690 at 646.483 kb on + strand, within BPHYT_RS22690 at 646.534 kb on + strand, within BPHYT_RS22690 at 646.535 kb on - strand, within BPHYT_RS22690 at 646.582 kb on + strand, within BPHYT_RS22690 at 646.583 kb on - strand, within BPHYT_RS22690 at 646.585 kb on - strand, within BPHYT_RS22690 at 646.786 kb on + strand, within BPHYT_RS22690 at 646.786 kb on + strand, within BPHYT_RS22690 at 646.806 kb on + strand, within BPHYT_RS22690 at 646.987 kb on + strand, within BPHYT_RS22690 at 646.987 kb on + strand, within BPHYT_RS22690 at 646.987 kb on + strand, within BPHYT_RS22690 at 646.987 kb on + strand, within BPHYT_RS22690 at 646.987 kb on + strand, within BPHYT_RS22690 at 646.988 kb on - strand, within BPHYT_RS22690 at 646.988 kb on - strand, within BPHYT_RS22690 at 647.473 kb on + strand, within BPHYT_RS22695 at 647.474 kb on - strand, within BPHYT_RS22695 at 647.594 kb on - strand, within BPHYT_RS22695 at 647.644 kb on - strand, within BPHYT_RS22695 at 647.717 kb on - strand, within BPHYT_RS22695 at 647.781 kb on - strand, within BPHYT_RS22695 at 647.799 kb on + strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.800 kb on - strand, within BPHYT_RS22695 at 647.847 kb on + strand, within BPHYT_RS22695 at 647.848 kb on - strand, within BPHYT_RS22695 at 647.853 kb on + strand, within BPHYT_RS22695 at 647.853 kb on + strand, within BPHYT_RS22695 at 647.854 kb on - strand, within BPHYT_RS22695 at 647.980 kb on - strand, within BPHYT_RS22695 at 647.980 kb on - strand, within BPHYT_RS22695 at 648.094 kb on - strand at 648.478 kb on + strand, within BPHYT_RS22700 at 648.479 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.590 kb on - strand, within BPHYT_RS22700 at 648.613 kb on + strand, within BPHYT_RS22700 at 648.613 kb on + strand, within BPHYT_RS22700 at 648.679 kb on + strand, within BPHYT_RS22700 at 648.890 kb on - strand, within BPHYT_RS22700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 646,396 + BPHYT_RS22690 0.35 +0.7 646,483 + BPHYT_RS22690 0.41 -0.9 646,534 + BPHYT_RS22690 0.45 +0.5 646,535 - BPHYT_RS22690 0.45 -0.4 646,582 + BPHYT_RS22690 0.48 +1.2 646,583 - BPHYT_RS22690 0.48 -0.2 646,585 - BPHYT_RS22690 0.48 +0.1 646,786 + BPHYT_RS22690 0.63 -0.8 646,786 + BPHYT_RS22690 0.63 -0.2 646,806 + BPHYT_RS22690 0.64 +1.3 646,987 + BPHYT_RS22690 0.78 -0.5 646,987 + BPHYT_RS22690 0.78 +0.2 646,987 + BPHYT_RS22690 0.78 +0.4 646,987 + BPHYT_RS22690 0.78 +0.7 646,987 + BPHYT_RS22690 0.78 +0.8 646,988 - BPHYT_RS22690 0.78 +0.6 646,988 - BPHYT_RS22690 0.78 +0.0 647,473 + BPHYT_RS22695 0.15 -0.2 647,474 - BPHYT_RS22695 0.16 -1.5 647,594 - BPHYT_RS22695 0.33 -1.1 647,644 - BPHYT_RS22695 0.40 -0.2 647,717 - BPHYT_RS22695 0.50 -1.1 647,781 - BPHYT_RS22695 0.60 -1.3 647,799 + BPHYT_RS22695 0.62 -1.3 647,800 - BPHYT_RS22695 0.62 -2.6 647,800 - BPHYT_RS22695 0.62 -0.9 647,800 - BPHYT_RS22695 0.62 -0.4 647,800 - BPHYT_RS22695 0.62 -0.2 647,847 + BPHYT_RS22695 0.69 -0.9 647,848 - BPHYT_RS22695 0.69 -0.0 647,853 + BPHYT_RS22695 0.70 +0.4 647,853 + BPHYT_RS22695 0.70 -1.5 647,854 - BPHYT_RS22695 0.70 -1.5 647,980 - BPHYT_RS22695 0.88 -0.8 647,980 - BPHYT_RS22695 0.88 -1.9 648,094 - +0.3 648,478 + BPHYT_RS22700 0.25 -0.7 648,479 - BPHYT_RS22700 0.25 -0.5 648,590 - BPHYT_RS22700 0.34 -0.1 648,590 - BPHYT_RS22700 0.34 -0.6 648,590 - BPHYT_RS22700 0.34 +0.4 648,613 + BPHYT_RS22700 0.36 -0.3 648,613 + BPHYT_RS22700 0.36 +0.2 648,679 + BPHYT_RS22700 0.41 +0.3 648,890 - BPHYT_RS22700 0.57 +0.1
Or see this region's nucleotide sequence