Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12985

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12980 and BPHYT_RS12985 are separated by 23 nucleotidesBPHYT_RS12985 and BPHYT_RS12990 are separated by 63 nucleotides BPHYT_RS12980: BPHYT_RS12980 - ATP-dependent helicase, at 2,965,238 to 2,969,530 _RS12980 BPHYT_RS12985: BPHYT_RS12985 - amino acid acetyltransferase, at 2,969,554 to 2,970,942 _RS12985 BPHYT_RS12990: BPHYT_RS12990 - iron transporter, at 2,971,006 to 2,971,272 _RS12990 Position (kb) 2969 2970 2971Strain fitness (log2 ratio) -2 -1 0 1at 2968.737 kb on + strand, within BPHYT_RS12980at 2968.800 kb on + strand, within BPHYT_RS12980at 2968.843 kb on + strand, within BPHYT_RS12980at 2968.844 kb on - strand, within BPHYT_RS12980at 2968.906 kb on - strand, within BPHYT_RS12980at 2969.170 kb on + strandat 2969.171 kb on - strandat 2969.542 kb on - strandat 2969.544 kb on - strandat 2969.671 kb on + strandat 2969.671 kb on + strandat 2969.672 kb on - strandat 2969.688 kb on + strandat 2969.880 kb on + strand, within BPHYT_RS12985at 2969.970 kb on + strand, within BPHYT_RS12985at 2970.316 kb on + strand, within BPHYT_RS12985at 2970.487 kb on + strand, within BPHYT_RS12985at 2970.899 kb on - strandat 2970.950 kb on + strandat 2970.951 kb on - strandat 2970.951 kb on - strandat 2970.951 kb on - strandat 2970.951 kb on - strandat 2970.951 kb on - strandat 2970.954 kb on + strandat 2970.954 kb on + strandat 2970.955 kb on - strandat 2970.955 kb on - strandat 2970.955 kb on - strandat 2971.005 kb on + strandat 2971.005 kb on + strandat 2971.087 kb on + strand, within BPHYT_RS12990at 2971.088 kb on - strand, within BPHYT_RS12990at 2971.249 kb on + strandat 2971.249 kb on + strandat 2971.270 kb on + strandat 2971.270 kb on + strandat 2971.275 kb on + strandat 2971.275 kb on + strandat 2971.275 kb on + strandat 2971.276 kb on - strandat 2971.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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2,968,737 + BPHYT_RS12980 0.82 +0.3
2,968,800 + BPHYT_RS12980 0.83 -0.3
2,968,843 + BPHYT_RS12980 0.84 +0.2
2,968,844 - BPHYT_RS12980 0.84 -0.1
2,968,906 - BPHYT_RS12980 0.85 -0.2
2,969,170 + -0.7
2,969,171 - +0.5
2,969,542 - +0.2
2,969,544 - -0.4
2,969,671 + -2.1
2,969,671 + +1.2
2,969,672 - -0.4
2,969,688 + +1.2
2,969,880 + BPHYT_RS12985 0.23 -0.4
2,969,970 + BPHYT_RS12985 0.30 -0.4
2,970,316 + BPHYT_RS12985 0.55 -0.4
2,970,487 + BPHYT_RS12985 0.67 +0.2
2,970,899 - -2.1
2,970,950 + -0.2
2,970,951 - +0.0
2,970,951 - +0.5
2,970,951 - +0.4
2,970,951 - +0.2
2,970,951 - +0.6
2,970,954 + -0.0
2,970,954 + +0.6
2,970,955 - -0.8
2,970,955 - +0.2
2,970,955 - +1.0
2,971,005 + +0.2
2,971,005 + -0.6
2,971,087 + BPHYT_RS12990 0.30 -1.3
2,971,088 - BPHYT_RS12990 0.31 +0.1
2,971,249 + +0.0
2,971,249 + +0.2
2,971,270 + -0.4
2,971,270 + +0.3
2,971,275 + +0.2
2,971,275 + +0.5
2,971,275 + -1.1
2,971,276 - -1.1
2,971,293 + +0.5

Or see this region's nucleotide sequence