Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS12980 and BPHYT_RS12985 are separated by 23 nucleotides BPHYT_RS12985 and BPHYT_RS12990 are separated by 63 nucleotides
BPHYT_RS12980: BPHYT_RS12980 - ATP-dependent helicase, at 2,965,238 to 2,969,530
_RS12980
BPHYT_RS12985: BPHYT_RS12985 - amino acid acetyltransferase, at 2,969,554 to 2,970,942
_RS12985
BPHYT_RS12990: BPHYT_RS12990 - iron transporter, at 2,971,006 to 2,971,272
_RS12990
Position (kb)
2969
2970
2971 Strain fitness (log2 ratio)
-2
-1
0
1 at 2968.737 kb on + strand, within BPHYT_RS12980 at 2968.800 kb on + strand, within BPHYT_RS12980 at 2968.843 kb on + strand, within BPHYT_RS12980 at 2968.844 kb on - strand, within BPHYT_RS12980 at 2968.906 kb on - strand, within BPHYT_RS12980 at 2969.170 kb on + strand at 2969.171 kb on - strand at 2969.542 kb on - strand at 2969.544 kb on - strand at 2969.671 kb on + strand at 2969.671 kb on + strand at 2969.672 kb on - strand at 2969.688 kb on + strand at 2969.880 kb on + strand, within BPHYT_RS12985 at 2969.970 kb on + strand, within BPHYT_RS12985 at 2970.316 kb on + strand, within BPHYT_RS12985 at 2970.487 kb on + strand, within BPHYT_RS12985 at 2970.899 kb on - strand at 2970.950 kb on + strand at 2970.951 kb on - strand at 2970.951 kb on - strand at 2970.951 kb on - strand at 2970.951 kb on - strand at 2970.951 kb on - strand at 2970.954 kb on + strand at 2970.954 kb on + strand at 2970.955 kb on - strand at 2970.955 kb on - strand at 2970.955 kb on - strand at 2971.005 kb on + strand at 2971.005 kb on + strand at 2971.087 kb on + strand, within BPHYT_RS12990 at 2971.088 kb on - strand, within BPHYT_RS12990 at 2971.249 kb on + strand at 2971.249 kb on + strand at 2971.270 kb on + strand at 2971.270 kb on + strand at 2971.275 kb on + strand at 2971.275 kb on + strand at 2971.275 kb on + strand at 2971.276 kb on - strand at 2971.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,968,737 + BPHYT_RS12980 0.82 +0.3 2,968,800 + BPHYT_RS12980 0.83 -0.3 2,968,843 + BPHYT_RS12980 0.84 +0.2 2,968,844 - BPHYT_RS12980 0.84 -0.1 2,968,906 - BPHYT_RS12980 0.85 -0.2 2,969,170 + -0.7 2,969,171 - +0.5 2,969,542 - +0.2 2,969,544 - -0.4 2,969,671 + -2.1 2,969,671 + +1.2 2,969,672 - -0.4 2,969,688 + +1.2 2,969,880 + BPHYT_RS12985 0.23 -0.4 2,969,970 + BPHYT_RS12985 0.30 -0.4 2,970,316 + BPHYT_RS12985 0.55 -0.4 2,970,487 + BPHYT_RS12985 0.67 +0.2 2,970,899 - -2.1 2,970,950 + -0.2 2,970,951 - +0.0 2,970,951 - +0.5 2,970,951 - +0.4 2,970,951 - +0.2 2,970,951 - +0.6 2,970,954 + -0.0 2,970,954 + +0.6 2,970,955 - -0.8 2,970,955 - +0.2 2,970,955 - +1.0 2,971,005 + +0.2 2,971,005 + -0.6 2,971,087 + BPHYT_RS12990 0.30 -1.3 2,971,088 - BPHYT_RS12990 0.31 +0.1 2,971,249 + +0.0 2,971,249 + +0.2 2,971,270 + -0.4 2,971,270 + +0.3 2,971,275 + +0.2 2,971,275 + +0.5 2,971,275 + -1.1 2,971,276 - -1.1 2,971,293 + +0.5
Or see this region's nucleotide sequence