Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03680 and BPHYT_RS03685 are separated by 185 nucleotides BPHYT_RS03685 and BPHYT_RS03690 are separated by 19 nucleotides BPHYT_RS03690 and BPHYT_RS03695 are separated by 33 nucleotides
BPHYT_RS03680: BPHYT_RS03680 - tRNA-Lys, at 838,129 to 838,204
_RS03680
BPHYT_RS03685: BPHYT_RS03685 - Tol system periplasmic component YbgF, at 838,390 to 839,139
_RS03685
BPHYT_RS03690: BPHYT_RS03690 - membrane protein, at 839,159 to 839,668
_RS03690
BPHYT_RS03695: BPHYT_RS03695 - protein TolB, at 839,702 to 840,994
_RS03695
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1 at 837.453 kb on + strand at 837.453 kb on + strand at 837.454 kb on - strand at 837.565 kb on + strand at 837.617 kb on - strand at 837.739 kb on + strand at 837.739 kb on + strand at 837.740 kb on - strand at 837.743 kb on + strand at 837.916 kb on - strand at 838.285 kb on - strand at 838.371 kb on + strand at 838.383 kb on - strand at 838.392 kb on - strand at 838.446 kb on - strand at 838.557 kb on - strand, within BPHYT_RS03685 at 838.598 kb on + strand, within BPHYT_RS03685 at 838.652 kb on + strand, within BPHYT_RS03685 at 839.157 kb on - strand at 839.160 kb on + strand at 839.690 kb on - strand at 839.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 837,453 + +0.6 837,453 + -0.2 837,454 - -0.5 837,565 + +0.5 837,617 - -1.4 837,739 + -0.3 837,739 + -0.1 837,740 - -1.9 837,743 + -0.3 837,916 - -0.5 838,285 - -1.2 838,371 + +0.8 838,383 - -0.9 838,392 - -0.8 838,446 - -0.7 838,557 - BPHYT_RS03685 0.22 -0.2 838,598 + BPHYT_RS03685 0.28 -0.9 838,652 + BPHYT_RS03685 0.35 -2.1 839,157 - +0.1 839,160 + -1.6 839,690 - -0.2 839,711 - +0.6
Or see this region's nucleotide sequence