Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34425 and BPHYT_RS34430 are separated by 31 nucleotides BPHYT_RS34430 and BPHYT_RS34435 are separated by 43 nucleotides BPHYT_RS34435 and BPHYT_RS34440 are separated by 180 nucleotides
BPHYT_RS34425: BPHYT_RS34425 - lactate dehydrogenase, at 3,330,037 to 3,333,060
_RS34425
BPHYT_RS34430: BPHYT_RS34430 - 2-keto-4-pentenoate hydratase, at 3,333,092 to 3,333,841
_RS34430
BPHYT_RS34435: BPHYT_RS34435 - MFS transporter, at 3,333,885 to 3,335,168
_RS34435
BPHYT_RS34440: BPHYT_RS34440 - serine--glyoxylate aminotransferase, at 3,335,349 to 3,336,569
_RS34440
Position (kb) 3333
3334
3335
3336 Strain fitness (log2 ratio) -1
0
1
2 at 3332.898 kb on - strand at 3333.072 kb on - strand at 3333.097 kb on - strand at 3333.178 kb on - strand, within BPHYT_RS34430 at 3333.841 kb on + strand at 3333.842 kb on - strand at 3334.027 kb on + strand, within BPHYT_RS34435 at 3334.207 kb on + strand, within BPHYT_RS34435 at 3334.208 kb on - strand, within BPHYT_RS34435 at 3334.344 kb on - strand, within BPHYT_RS34435 at 3334.412 kb on - strand, within BPHYT_RS34435 at 3334.469 kb on - strand, within BPHYT_RS34435 at 3334.477 kb on + strand, within BPHYT_RS34435 at 3334.613 kb on + strand, within BPHYT_RS34435 at 3334.614 kb on - strand, within BPHYT_RS34435 at 3334.658 kb on + strand, within BPHYT_RS34435 at 3334.661 kb on - strand, within BPHYT_RS34435 at 3334.661 kb on - strand, within BPHYT_RS34435 at 3334.661 kb on - strand, within BPHYT_RS34435 at 3334.990 kb on + strand, within BPHYT_RS34435 at 3334.991 kb on - strand, within BPHYT_RS34435 at 3335.095 kb on + strand at 3335.107 kb on + strand at 3335.107 kb on + strand at 3335.107 kb on + strand at 3335.127 kb on + strand at 3335.224 kb on + strand at 3335.403 kb on - strand at 3335.478 kb on + strand, within BPHYT_RS34440 at 3335.671 kb on - strand, within BPHYT_RS34440 at 3335.812 kb on + strand, within BPHYT_RS34440 at 3335.813 kb on - strand, within BPHYT_RS34440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,332,898 - +0.7 3,333,072 - -0.5 3,333,097 - +0.1 3,333,178 - BPHYT_RS34430 0.11 +1.5 3,333,841 + +0.1 3,333,842 - +1.0 3,334,027 + BPHYT_RS34435 0.11 -0.6 3,334,207 + BPHYT_RS34435 0.25 +0.5 3,334,208 - BPHYT_RS34435 0.25 +0.2 3,334,344 - BPHYT_RS34435 0.36 -0.7 3,334,412 - BPHYT_RS34435 0.41 -0.2 3,334,469 - BPHYT_RS34435 0.45 -0.2 3,334,477 + BPHYT_RS34435 0.46 +1.5 3,334,613 + BPHYT_RS34435 0.57 +1.4 3,334,614 - BPHYT_RS34435 0.57 -0.5 3,334,658 + BPHYT_RS34435 0.60 -0.5 3,334,661 - BPHYT_RS34435 0.60 +0.9 3,334,661 - BPHYT_RS34435 0.60 -0.3 3,334,661 - BPHYT_RS34435 0.60 +1.9 3,334,990 + BPHYT_RS34435 0.86 -0.2 3,334,991 - BPHYT_RS34435 0.86 +0.0 3,335,095 + -0.1 3,335,107 + +0.4 3,335,107 + -0.1 3,335,107 + -1.4 3,335,127 + -0.2 3,335,224 + +0.8 3,335,403 - +0.5 3,335,478 + BPHYT_RS34440 0.11 +0.1 3,335,671 - BPHYT_RS34440 0.26 -0.0 3,335,812 + BPHYT_RS34440 0.38 +0.2 3,335,813 - BPHYT_RS34440 0.38 +0.4
Or see this region's nucleotide sequence