Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18510

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18505 and BPHYT_RS18510 are separated by 82 nucleotidesBPHYT_RS18510 and BPHYT_RS18515 are separated by 0 nucleotides BPHYT_RS18505: BPHYT_RS18505 - amino acid dehydrogenase, at 4,162,923 to 4,164,149 _RS18505 BPHYT_RS18510: BPHYT_RS18510 - endoribonuclease L-PSP, at 4,164,232 to 4,164,585 _RS18510 BPHYT_RS18515: BPHYT_RS18515 - hypothetical protein, at 4,164,586 to 4,164,789 _RS18515 Position (kb) 4164 4165Strain fitness (log2 ratio) -2 -1 0 1 2at 4163.246 kb on - strand, within BPHYT_RS18505at 4163.263 kb on - strand, within BPHYT_RS18505at 4163.670 kb on + strand, within BPHYT_RS18505at 4163.671 kb on - strand, within BPHYT_RS18505at 4163.736 kb on + strand, within BPHYT_RS18505at 4163.736 kb on + strand, within BPHYT_RS18505at 4163.736 kb on + strand, within BPHYT_RS18505at 4163.736 kb on + strand, within BPHYT_RS18505at 4163.737 kb on - strand, within BPHYT_RS18505at 4163.751 kb on + strand, within BPHYT_RS18505at 4163.785 kb on + strand, within BPHYT_RS18505at 4163.785 kb on + strand, within BPHYT_RS18505at 4163.786 kb on - strand, within BPHYT_RS18505at 4163.830 kb on - strand, within BPHYT_RS18505at 4163.939 kb on + strand, within BPHYT_RS18505at 4163.940 kb on - strand, within BPHYT_RS18505at 4163.940 kb on - strand, within BPHYT_RS18505at 4163.940 kb on - strand, within BPHYT_RS18505at 4163.940 kb on - strand, within BPHYT_RS18505at 4164.057 kb on - strandat 4164.156 kb on + strandat 4164.190 kb on - strandat 4164.190 kb on - strandat 4164.204 kb on + strandat 4164.204 kb on + strandat 4164.205 kb on - strandat 4164.205 kb on - strandat 4164.298 kb on - strand, within BPHYT_RS18510at 4164.304 kb on + strand, within BPHYT_RS18510at 4164.304 kb on + strand, within BPHYT_RS18510at 4164.305 kb on - strand, within BPHYT_RS18510at 4164.305 kb on - strand, within BPHYT_RS18510at 4164.305 kb on - strand, within BPHYT_RS18510at 4164.320 kb on + strand, within BPHYT_RS18510at 4164.445 kb on - strand, within BPHYT_RS18510at 4164.583 kb on + strandat 4164.583 kb on + strandat 4164.583 kb on + strandat 4164.603 kb on + strandat 4164.603 kb on + strandat 4164.603 kb on + strandat 4164.604 kb on - strandat 4164.608 kb on + strand, within BPHYT_RS18515at 4164.609 kb on - strand, within BPHYT_RS18515at 4164.890 kb on + strandat 4164.891 kb on - strandat 4164.891 kb on - strandat 4164.891 kb on - strandat 4164.902 kb on + strandat 4164.976 kb on + strandat 4165.016 kb on - strandat 4165.016 kb on - strandat 4165.016 kb on - strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.181 kb on + strandat 4165.182 kb on - strandat 4165.182 kb on - strandat 4165.185 kb on + strandat 4165.185 kb on + strandat 4165.185 kb on + strandat 4165.185 kb on + strandat 4165.185 kb on + strandat 4165.186 kb on - strandat 4165.186 kb on - strandat 4165.186 kb on - strandat 4165.392 kb on + strandat 4165.549 kb on + strandat 4165.550 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
4,163,246 - BPHYT_RS18505 0.26 +0.2
4,163,263 - BPHYT_RS18505 0.28 -0.2
4,163,670 + BPHYT_RS18505 0.61 -0.4
4,163,671 - BPHYT_RS18505 0.61 +0.1
4,163,736 + BPHYT_RS18505 0.66 -0.3
4,163,736 + BPHYT_RS18505 0.66 +0.5
4,163,736 + BPHYT_RS18505 0.66 -0.2
4,163,736 + BPHYT_RS18505 0.66 +0.8
4,163,737 - BPHYT_RS18505 0.66 -0.4
4,163,751 + BPHYT_RS18505 0.67 +0.9
4,163,785 + BPHYT_RS18505 0.70 +2.2
4,163,785 + BPHYT_RS18505 0.70 -1.1
4,163,786 - BPHYT_RS18505 0.70 -0.9
4,163,830 - BPHYT_RS18505 0.74 +0.4
4,163,939 + BPHYT_RS18505 0.83 +0.8
4,163,940 - BPHYT_RS18505 0.83 -0.1
4,163,940 - BPHYT_RS18505 0.83 +0.5
4,163,940 - BPHYT_RS18505 0.83 -0.5
4,163,940 - BPHYT_RS18505 0.83 -0.1
4,164,057 - -0.2
4,164,156 + -0.7
4,164,190 - -0.4
4,164,190 - -0.8
4,164,204 + -0.6
4,164,204 + -1.1
4,164,205 - +0.4
4,164,205 - -2.2
4,164,298 - BPHYT_RS18510 0.19 -0.9
4,164,304 + BPHYT_RS18510 0.20 -0.1
4,164,304 + BPHYT_RS18510 0.20 -0.1
4,164,305 - BPHYT_RS18510 0.21 -0.0
4,164,305 - BPHYT_RS18510 0.21 -0.2
4,164,305 - BPHYT_RS18510 0.21 -0.2
4,164,320 + BPHYT_RS18510 0.25 +0.1
4,164,445 - BPHYT_RS18510 0.60 -0.6
4,164,583 + +0.5
4,164,583 + -0.1
4,164,583 + -0.8
4,164,603 + -0.5
4,164,603 + -0.5
4,164,603 + -1.0
4,164,604 - -0.8
4,164,608 + BPHYT_RS18515 0.11 +1.6
4,164,609 - BPHYT_RS18515 0.11 -0.0
4,164,890 + -0.7
4,164,891 - +0.1
4,164,891 - +0.4
4,164,891 - +1.0
4,164,902 + +0.6
4,164,976 + -0.5
4,165,016 - +0.4
4,165,016 - +0.2
4,165,016 - -1.0
4,165,181 + +0.7
4,165,181 + -0.5
4,165,181 + +0.2
4,165,181 + -1.5
4,165,181 + -0.2
4,165,181 + -1.1
4,165,181 + -1.8
4,165,182 - +0.5
4,165,182 - +0.6
4,165,185 + -0.3
4,165,185 + +0.4
4,165,185 + +0.2
4,165,185 + +0.4
4,165,185 + -0.3
4,165,186 - -0.4
4,165,186 - +1.5
4,165,186 - -0.8
4,165,392 + -1.4
4,165,549 + -0.7
4,165,550 - -0.9

Or see this region's nucleotide sequence