Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17265

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17260 and BPHYT_RS17265 overlap by 4 nucleotidesBPHYT_RS17265 and BPHYT_RS17270 overlap by 4 nucleotidesBPHYT_RS17270 and BPHYT_RS17275 overlap by 4 nucleotides BPHYT_RS17260: BPHYT_RS17260 - UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, at 3,910,563 to 3,912,110 _RS17260 BPHYT_RS17265: BPHYT_RS17265 - cell division protein, at 3,912,107 to 3,913,972 _RS17265 BPHYT_RS17270: BPHYT_RS17270 - cell division protein FtsL, at 3,913,969 to 3,914,319 _RS17270 BPHYT_RS17275: BPHYT_RS17275 - 16S rRNA methyltransferase, at 3,914,316 to 3,915,257 _RS17275 Position (kb) 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1at 3913.135 kb on - strand, within BPHYT_RS17265

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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3,913,135 - BPHYT_RS17265 0.55 -1.8

Or see this region's nucleotide sequence