Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03150 and BPHYT_RS03155 are separated by 34 nucleotides BPHYT_RS03155 and BPHYT_RS03160 are separated by 84 nucleotides BPHYT_RS03160 and BPHYT_RS03165 are separated by 67 nucleotides
BPHYT_RS03150: BPHYT_RS03150 - Phosphoglycerate dehydrogenase (EC:1.1.1.95) <small>(from data)</small>, at 704,985 to 709,079
_RS03150
BPHYT_RS03155: BPHYT_RS03155 - histidine triad (HIT) protein, at 709,114 to 709,542
_RS03155
BPHYT_RS03160: BPHYT_RS03160 - hypothetical protein, at 709,627 to 710,040
_RS03160
BPHYT_RS03165: BPHYT_RS03165 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 710,108 to 710,839
_RS03165
Position (kb) 709
710 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 708.181 kb on - strand, within BPHYT_RS03150 at 708.181 kb on - strand, within BPHYT_RS03150 at 708.282 kb on + strand, within BPHYT_RS03150 at 708.282 kb on + strand, within BPHYT_RS03150 at 708.297 kb on + strand, within BPHYT_RS03150 at 708.549 kb on + strand, within BPHYT_RS03150 at 708.640 kb on - strand, within BPHYT_RS03150 at 708.949 kb on - strand at 708.949 kb on - strand at 708.978 kb on + strand at 708.979 kb on - strand at 709.032 kb on + strand at 709.032 kb on + strand at 709.294 kb on + strand, within BPHYT_RS03155 at 709.491 kb on + strand at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.492 kb on - strand, within BPHYT_RS03155 at 709.616 kb on - strand at 709.626 kb on + strand at 709.626 kb on + strand at 709.705 kb on + strand, within BPHYT_RS03160 at 709.706 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.754 kb on - strand, within BPHYT_RS03160 at 709.823 kb on + strand, within BPHYT_RS03160 at 709.856 kb on - strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 709.900 kb on + strand, within BPHYT_RS03160 at 710.041 kb on + strand at 710.041 kb on + strand at 710.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 708,181 - BPHYT_RS03150 0.78 -4.0 708,181 - BPHYT_RS03150 0.78 -1.8 708,282 + BPHYT_RS03150 0.81 -4.3 708,282 + BPHYT_RS03150 0.81 -3.7 708,297 + BPHYT_RS03150 0.81 -3.0 708,549 + BPHYT_RS03150 0.87 -2.0 708,640 - BPHYT_RS03150 0.89 -5.9 708,949 - -5.4 708,949 - -2.7 708,978 + -2.6 708,979 - -2.5 709,032 + -4.2 709,032 + -2.3 709,294 + BPHYT_RS03155 0.42 -0.4 709,491 + +1.2 709,492 - BPHYT_RS03155 0.88 +0.0 709,492 - BPHYT_RS03155 0.88 +0.3 709,492 - BPHYT_RS03155 0.88 -0.2 709,616 - -0.1 709,626 + -0.3 709,626 + +0.0 709,705 + BPHYT_RS03160 0.19 +1.1 709,706 - BPHYT_RS03160 0.19 -0.3 709,754 - BPHYT_RS03160 0.31 -0.2 709,754 - BPHYT_RS03160 0.31 +0.4 709,823 + BPHYT_RS03160 0.47 +0.4 709,856 - BPHYT_RS03160 0.55 -0.3 709,900 + BPHYT_RS03160 0.66 -0.8 709,900 + BPHYT_RS03160 0.66 +1.2 709,900 + BPHYT_RS03160 0.66 +1.1 710,041 + -0.8 710,041 + +0.2 710,088 + -0.2
Or see this region's nucleotide sequence