Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36295 and BPHYT_RS36300 are separated by 576 nucleotides BPHYT_RS36300 and BPHYT_RS36305 overlap by 32 nucleotides BPHYT_RS36305 and BPHYT_RS36310 are separated by 4 nucleotides BPHYT_RS36310 and BPHYT_RS36315 overlap by 17 nucleotides
BPHYT_RS36295: BPHYT_RS36295 - hypothetical protein, at 72,195 to 72,563
_RS36295
BPHYT_RS36300: BPHYT_RS36300 - hypothetical protein, at 73,140 to 73,421
_RS36300
BPHYT_RS36305: BPHYT_RS36305 - hypothetical protein, at 73,390 to 73,812
_RS36305
BPHYT_RS36310: BPHYT_RS36310 - hypothetical protein, at 73,817 to 74,152
_RS36310
BPHYT_RS36315: BPHYT_RS36315 - CagE TrbE VirB component of type IV transporter system, at 74,136 to 76,685
_RS36315
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.445 kb on - strand at 72.462 kb on - strand, within BPHYT_RS36295 at 72.528 kb on - strand at 72.537 kb on - strand at 72.634 kb on + strand at 72.747 kb on - strand at 72.747 kb on - strand at 72.947 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.095 kb on - strand at 73.135 kb on - strand at 73.135 kb on - strand at 73.314 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.420 kb on - strand at 73.452 kb on + strand, within BPHYT_RS36305 at 73.501 kb on + strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.600 kb on - strand, within BPHYT_RS36305 at 73.653 kb on - strand, within BPHYT_RS36305 at 73.817 kb on - strand at 73.884 kb on - strand, within BPHYT_RS36310 at 73.884 kb on - strand, within BPHYT_RS36310 at 73.888 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.043 kb on - strand, within BPHYT_RS36310 at 74.049 kb on - strand, within BPHYT_RS36310 at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.136 kb on - strand at 74.146 kb on - strand at 74.178 kb on - strand at 74.184 kb on + strand at 74.184 kb on + strand at 74.199 kb on - strand at 74.199 kb on - strand at 74.250 kb on - strand at 74.422 kb on - strand, within BPHYT_RS36315 at 74.430 kb on + strand, within BPHYT_RS36315 at 74.431 kb on - strand, within BPHYT_RS36315 at 74.519 kb on + strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.520 kb on - strand, within BPHYT_RS36315 at 74.700 kb on - strand, within BPHYT_RS36315 at 74.722 kb on - strand, within BPHYT_RS36315
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 72,445 - +1.1 72,462 - BPHYT_RS36295 0.72 +1.9 72,528 - +1.1 72,537 - +0.7 72,634 + -0.1 72,747 - +0.7 72,747 - +1.7 72,947 - +1.1 73,049 - +1.4 73,049 - +1.5 73,095 - -1.3 73,135 - -3.3 73,135 - -2.1 73,314 - BPHYT_RS36300 0.62 -2.0 73,362 - BPHYT_RS36300 0.79 -2.6 73,362 - BPHYT_RS36300 0.79 -3.4 73,362 - BPHYT_RS36300 0.79 -2.4 73,362 - BPHYT_RS36300 0.79 -3.5 73,362 - BPHYT_RS36300 0.79 -0.9 73,420 - +1.9 73,452 + BPHYT_RS36305 0.15 -1.3 73,501 + BPHYT_RS36305 0.26 +1.6 73,502 - BPHYT_RS36305 0.26 +0.1 73,502 - BPHYT_RS36305 0.26 +2.0 73,502 - BPHYT_RS36305 0.26 +1.3 73,502 - BPHYT_RS36305 0.26 +1.5 73,502 - BPHYT_RS36305 0.26 +0.5 73,502 - BPHYT_RS36305 0.26 +0.8 73,502 - BPHYT_RS36305 0.26 +0.9 73,600 - BPHYT_RS36305 0.50 +1.1 73,653 - BPHYT_RS36305 0.62 +0.0 73,817 - +1.1 73,884 - BPHYT_RS36310 0.20 +1.4 73,884 - BPHYT_RS36310 0.20 +1.3 73,888 - BPHYT_RS36310 0.21 +0.1 74,043 - BPHYT_RS36310 0.67 +0.6 74,043 - BPHYT_RS36310 0.67 +0.6 74,043 - BPHYT_RS36310 0.67 +1.1 74,043 - BPHYT_RS36310 0.67 +1.6 74,049 - BPHYT_RS36310 0.69 +2.2 74,136 - +0.5 74,136 - +1.5 74,136 - +0.4 74,136 - +1.3 74,136 - +0.9 74,146 - +0.7 74,178 - +0.2 74,184 + +1.8 74,184 + +0.3 74,199 - +0.8 74,199 - +2.3 74,250 - +1.1 74,422 - BPHYT_RS36315 0.11 +2.0 74,430 + BPHYT_RS36315 0.12 -0.0 74,431 - BPHYT_RS36315 0.12 +0.2 74,519 + BPHYT_RS36315 0.15 +1.3 74,520 - BPHYT_RS36315 0.15 +0.2 74,520 - BPHYT_RS36315 0.15 +0.1 74,520 - BPHYT_RS36315 0.15 +0.3 74,700 - BPHYT_RS36315 0.22 +0.7 74,722 - BPHYT_RS36315 0.23 +0.8
Or see this region's nucleotide sequence