Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34555 and BPHYT_RS34560 are separated by 37 nucleotides BPHYT_RS34560 and BPHYT_RS34565 overlap by 4 nucleotides BPHYT_RS34565 and BPHYT_RS34570 are separated by 45 nucleotides
BPHYT_RS34555: BPHYT_RS34555 - hypothetical protein, at 3,359,418 to 3,360,389
_RS34555
BPHYT_RS34560: BPHYT_RS34560 - hypothetical protein, at 3,360,427 to 3,360,969
_RS34560
BPHYT_RS34565: BPHYT_RS34565 - chemotaxis protein, at 3,360,966 to 3,361,700
_RS34565
BPHYT_RS34570: BPHYT_RS34570 - chemotaxis protein CheA, at 3,361,746 to 3,364,136
_RS34570
Position (kb) 3360
3361
3362 Strain fitness (log2 ratio) -2
-1
0
1 at 3360.019 kb on + strand, within BPHYT_RS34555 at 3360.208 kb on + strand, within BPHYT_RS34555 at 3360.472 kb on - strand at 3360.746 kb on + strand, within BPHYT_RS34560 at 3360.746 kb on + strand, within BPHYT_RS34560 at 3360.747 kb on - strand, within BPHYT_RS34560 at 3360.747 kb on - strand, within BPHYT_RS34560 at 3361.114 kb on + strand, within BPHYT_RS34565 at 3361.425 kb on - strand, within BPHYT_RS34565 at 3361.688 kb on - strand at 3361.688 kb on - strand at 3361.731 kb on - strand at 3361.896 kb on + strand at 3361.897 kb on - strand at 3361.897 kb on - strand at 3361.897 kb on - strand at 3361.897 kb on - strand at 3362.304 kb on - strand, within BPHYT_RS34570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,360,019 + BPHYT_RS34555 0.62 -0.3 3,360,208 + BPHYT_RS34555 0.81 -1.9 3,360,472 - -0.0 3,360,746 + BPHYT_RS34560 0.59 -1.2 3,360,746 + BPHYT_RS34560 0.59 -0.6 3,360,747 - BPHYT_RS34560 0.59 +0.4 3,360,747 - BPHYT_RS34560 0.59 +0.6 3,361,114 + BPHYT_RS34565 0.20 +0.6 3,361,425 - BPHYT_RS34565 0.62 +0.2 3,361,688 - +0.0 3,361,688 - +0.2 3,361,731 - -0.3 3,361,896 + -0.3 3,361,897 - +0.5 3,361,897 - -0.9 3,361,897 - +0.4 3,361,897 - +0.5 3,362,304 - BPHYT_RS34570 0.23 -0.5
Or see this region's nucleotide sequence