Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31630

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31625 and BPHYT_RS31630 overlap by 4 nucleotidesBPHYT_RS31630 and BPHYT_RS31635 overlap by 8 nucleotides BPHYT_RS31625: BPHYT_RS31625 - membrane protein, at 2,648,597 to 2,649,601 _RS31625 BPHYT_RS31630: BPHYT_RS31630 - hypothetical protein, at 2,649,598 to 2,650,260 _RS31630 BPHYT_RS31635: BPHYT_RS31635 - choline dehydrogenase, at 2,650,253 to 2,651,896 _RS31635 Position (kb) 2649 2650 2651Strain fitness (log2 ratio) -1 0 1at 2648.626 kb on - strandat 2648.909 kb on + strand, within BPHYT_RS31625at 2649.005 kb on + strand, within BPHYT_RS31625at 2649.317 kb on + strand, within BPHYT_RS31625at 2650.100 kb on - strand, within BPHYT_RS31630at 2650.100 kb on - strand, within BPHYT_RS31630at 2650.167 kb on - strand, within BPHYT_RS31630at 2650.309 kb on - strandat 2650.309 kb on - strandat 2651.124 kb on + strand, within BPHYT_RS31635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
2,648,626 - +0.6
2,648,909 + BPHYT_RS31625 0.31 -0.1
2,649,005 + BPHYT_RS31625 0.41 +0.4
2,649,317 + BPHYT_RS31625 0.72 +0.9
2,650,100 - BPHYT_RS31630 0.76 -0.4
2,650,100 - BPHYT_RS31630 0.76 +0.6
2,650,167 - BPHYT_RS31630 0.86 +1.5
2,650,309 - -0.6
2,650,309 - +0.1
2,651,124 + BPHYT_RS31635 0.53 +0.6

Or see this region's nucleotide sequence