Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31220 and BPHYT_RS31225 are separated by 417 nucleotides BPHYT_RS31225 and BPHYT_RS31230 are separated by 64 nucleotides
BPHYT_RS31220: BPHYT_RS31220 - porin, at 2,562,979 to 2,564,088
_RS31220
BPHYT_RS31225: BPHYT_RS31225 - D-alanyl-D-alanine dipeptidase, at 2,564,506 to 2,565,069
_RS31225
BPHYT_RS31230: BPHYT_RS31230 - ABC transporter substrate-binding protein, at 2,565,134 to 2,566,741
_RS31230
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2563.514 kb on - strand, within BPHYT_RS31220 at 2563.667 kb on - strand, within BPHYT_RS31220 at 2563.724 kb on - strand, within BPHYT_RS31220 at 2563.757 kb on - strand, within BPHYT_RS31220 at 2563.757 kb on - strand, within BPHYT_RS31220 at 2563.874 kb on - strand, within BPHYT_RS31220 at 2563.875 kb on + strand, within BPHYT_RS31220 at 2563.969 kb on + strand, within BPHYT_RS31220 at 2563.970 kb on - strand, within BPHYT_RS31220 at 2564.038 kb on - strand at 2564.145 kb on + strand at 2564.146 kb on - strand at 2564.237 kb on + strand at 2564.238 kb on - strand at 2564.399 kb on + strand at 2564.400 kb on - strand at 2564.400 kb on - strand at 2564.400 kb on - strand at 2564.401 kb on + strand at 2564.453 kb on + strand at 2564.606 kb on - strand, within BPHYT_RS31225 at 2564.606 kb on - strand, within BPHYT_RS31225 at 2564.711 kb on - strand, within BPHYT_RS31225 at 2564.764 kb on + strand, within BPHYT_RS31225 at 2564.940 kb on - strand, within BPHYT_RS31225 at 2565.123 kb on - strand at 2565.317 kb on + strand, within BPHYT_RS31230 at 2565.328 kb on + strand, within BPHYT_RS31230 at 2565.328 kb on + strand, within BPHYT_RS31230 at 2565.632 kb on + strand, within BPHYT_RS31230 at 2565.770 kb on + strand, within BPHYT_RS31230 at 2566.011 kb on - strand, within BPHYT_RS31230 at 2566.011 kb on - strand, within BPHYT_RS31230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,563,514 - BPHYT_RS31220 0.48 -0.5 2,563,667 - BPHYT_RS31220 0.62 -0.2 2,563,724 - BPHYT_RS31220 0.67 +0.2 2,563,757 - BPHYT_RS31220 0.70 +0.3 2,563,757 - BPHYT_RS31220 0.70 -0.7 2,563,874 - BPHYT_RS31220 0.81 -1.0 2,563,875 + BPHYT_RS31220 0.81 +0.6 2,563,969 + BPHYT_RS31220 0.89 -0.4 2,563,970 - BPHYT_RS31220 0.89 -0.3 2,564,038 - +1.3 2,564,145 + -1.0 2,564,146 - -0.3 2,564,237 + +1.2 2,564,238 - -0.2 2,564,399 + -0.1 2,564,400 - +0.6 2,564,400 - +2.6 2,564,400 - -0.3 2,564,401 + +0.8 2,564,453 + -0.9 2,564,606 - BPHYT_RS31225 0.18 +0.6 2,564,606 - BPHYT_RS31225 0.18 -1.3 2,564,711 - BPHYT_RS31225 0.36 -1.2 2,564,764 + BPHYT_RS31225 0.46 +2.8 2,564,940 - BPHYT_RS31225 0.77 +1.9 2,565,123 - -0.4 2,565,317 + BPHYT_RS31230 0.11 +0.1 2,565,328 + BPHYT_RS31230 0.12 +0.9 2,565,328 + BPHYT_RS31230 0.12 +2.7 2,565,632 + BPHYT_RS31230 0.31 +1.6 2,565,770 + BPHYT_RS31230 0.40 +1.2 2,566,011 - BPHYT_RS31230 0.55 -0.0 2,566,011 - BPHYT_RS31230 0.55 -0.9
Or see this region's nucleotide sequence