Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31225

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31220 and BPHYT_RS31225 are separated by 417 nucleotidesBPHYT_RS31225 and BPHYT_RS31230 are separated by 64 nucleotides BPHYT_RS31220: BPHYT_RS31220 - porin, at 2,562,979 to 2,564,088 _RS31220 BPHYT_RS31225: BPHYT_RS31225 - D-alanyl-D-alanine dipeptidase, at 2,564,506 to 2,565,069 _RS31225 BPHYT_RS31230: BPHYT_RS31230 - ABC transporter substrate-binding protein, at 2,565,134 to 2,566,741 _RS31230 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -1 0 1 2 3at 2563.514 kb on - strand, within BPHYT_RS31220at 2563.667 kb on - strand, within BPHYT_RS31220at 2563.724 kb on - strand, within BPHYT_RS31220at 2563.757 kb on - strand, within BPHYT_RS31220at 2563.757 kb on - strand, within BPHYT_RS31220at 2563.874 kb on - strand, within BPHYT_RS31220at 2563.875 kb on + strand, within BPHYT_RS31220at 2563.969 kb on + strand, within BPHYT_RS31220at 2563.970 kb on - strand, within BPHYT_RS31220at 2564.038 kb on - strandat 2564.145 kb on + strandat 2564.146 kb on - strandat 2564.237 kb on + strandat 2564.238 kb on - strandat 2564.399 kb on + strandat 2564.400 kb on - strandat 2564.400 kb on - strandat 2564.400 kb on - strandat 2564.401 kb on + strandat 2564.453 kb on + strandat 2564.606 kb on - strand, within BPHYT_RS31225at 2564.606 kb on - strand, within BPHYT_RS31225at 2564.711 kb on - strand, within BPHYT_RS31225at 2564.764 kb on + strand, within BPHYT_RS31225at 2564.940 kb on - strand, within BPHYT_RS31225at 2565.123 kb on - strandat 2565.317 kb on + strand, within BPHYT_RS31230at 2565.328 kb on + strand, within BPHYT_RS31230at 2565.328 kb on + strand, within BPHYT_RS31230at 2565.632 kb on + strand, within BPHYT_RS31230at 2565.770 kb on + strand, within BPHYT_RS31230at 2566.011 kb on - strand, within BPHYT_RS31230at 2566.011 kb on - strand, within BPHYT_RS31230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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2,563,514 - BPHYT_RS31220 0.48 -0.5
2,563,667 - BPHYT_RS31220 0.62 -0.2
2,563,724 - BPHYT_RS31220 0.67 +0.2
2,563,757 - BPHYT_RS31220 0.70 +0.3
2,563,757 - BPHYT_RS31220 0.70 -0.7
2,563,874 - BPHYT_RS31220 0.81 -1.0
2,563,875 + BPHYT_RS31220 0.81 +0.6
2,563,969 + BPHYT_RS31220 0.89 -0.4
2,563,970 - BPHYT_RS31220 0.89 -0.3
2,564,038 - +1.3
2,564,145 + -1.0
2,564,146 - -0.3
2,564,237 + +1.2
2,564,238 - -0.2
2,564,399 + -0.1
2,564,400 - +0.6
2,564,400 - +2.6
2,564,400 - -0.3
2,564,401 + +0.8
2,564,453 + -0.9
2,564,606 - BPHYT_RS31225 0.18 +0.6
2,564,606 - BPHYT_RS31225 0.18 -1.3
2,564,711 - BPHYT_RS31225 0.36 -1.2
2,564,764 + BPHYT_RS31225 0.46 +2.8
2,564,940 - BPHYT_RS31225 0.77 +1.9
2,565,123 - -0.4
2,565,317 + BPHYT_RS31230 0.11 +0.1
2,565,328 + BPHYT_RS31230 0.12 +0.9
2,565,328 + BPHYT_RS31230 0.12 +2.7
2,565,632 + BPHYT_RS31230 0.31 +1.6
2,565,770 + BPHYT_RS31230 0.40 +1.2
2,566,011 - BPHYT_RS31230 0.55 -0.0
2,566,011 - BPHYT_RS31230 0.55 -0.9

Or see this region's nucleotide sequence