Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25730

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25720 and BPHYT_RS25725 are separated by 98 nucleotidesBPHYT_RS25725 and BPHYT_RS25730 overlap by 8 nucleotidesBPHYT_RS25730 and BPHYT_RS25735 overlap by 4 nucleotides BPHYT_RS25720: BPHYT_RS25720 - hypothetical protein, at 1,343,617 to 1,344,117 _RS25720 BPHYT_RS25725: BPHYT_RS25725 - hypothetical protein, at 1,344,216 to 1,344,713 _RS25725 BPHYT_RS25730: BPHYT_RS25730 - hypothetical protein, at 1,344,706 to 1,347,030 _RS25730 BPHYT_RS25735: BPHYT_RS25735 - integrase, at 1,347,027 to 1,348,070 _RS25735 Position (kb) 1344 1345 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1343.879 kb on + strand, within BPHYT_RS25720at 1343.879 kb on + strand, within BPHYT_RS25720at 1343.879 kb on + strand, within BPHYT_RS25720at 1343.920 kb on - strand, within BPHYT_RS25720at 1344.123 kb on - strandat 1344.123 kb on - strandat 1344.408 kb on + strand, within BPHYT_RS25725at 1344.535 kb on + strandat 1344.800 kb on - strandat 1345.253 kb on + strand, within BPHYT_RS25730at 1345.312 kb on + strand, within BPHYT_RS25730at 1345.663 kb on - strand, within BPHYT_RS25730at 1345.663 kb on - strand, within BPHYT_RS25730at 1345.921 kb on + strand, within BPHYT_RS25730at 1345.921 kb on + strand, within BPHYT_RS25730at 1345.921 kb on + strand, within BPHYT_RS25730at 1345.929 kb on + strand, within BPHYT_RS25730at 1346.698 kb on + strand, within BPHYT_RS25730at 1346.699 kb on - strand, within BPHYT_RS25730at 1346.699 kb on - strand, within BPHYT_RS25730at 1347.066 kb on + strandat 1347.241 kb on + strand, within BPHYT_RS25735at 1347.392 kb on - strand, within BPHYT_RS25735at 1347.393 kb on + strand, within BPHYT_RS25735at 1347.825 kb on + strand, within BPHYT_RS25735

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,343,879 + BPHYT_RS25720 0.52 +1.2
1,343,879 + BPHYT_RS25720 0.52 -0.2
1,343,879 + BPHYT_RS25720 0.52 -0.2
1,343,920 - BPHYT_RS25720 0.60 +2.5
1,344,123 - -1.9
1,344,123 - -0.8
1,344,408 + BPHYT_RS25725 0.39 -1.6
1,344,535 + +1.2
1,344,800 - +0.2
1,345,253 + BPHYT_RS25730 0.24 -0.8
1,345,312 + BPHYT_RS25730 0.26 +0.4
1,345,663 - BPHYT_RS25730 0.41 +3.0
1,345,663 - BPHYT_RS25730 0.41 -1.7
1,345,921 + BPHYT_RS25730 0.52 -0.4
1,345,921 + BPHYT_RS25730 0.52 +1.2
1,345,921 + BPHYT_RS25730 0.52 -0.7
1,345,929 + BPHYT_RS25730 0.53 -0.8
1,346,698 + BPHYT_RS25730 0.86 +0.1
1,346,699 - BPHYT_RS25730 0.86 +0.4
1,346,699 - BPHYT_RS25730 0.86 -1.8
1,347,066 + +0.2
1,347,241 + BPHYT_RS25735 0.20 +0.1
1,347,392 - BPHYT_RS25735 0.35 -1.3
1,347,393 + BPHYT_RS25735 0.35 -0.8
1,347,825 + BPHYT_RS25735 0.76 -0.6

Or see this region's nucleotide sequence