Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23775 and BPHYT_RS23780 overlap by 4 nucleotides BPHYT_RS23780 and BPHYT_RS23785 are separated by 4 nucleotides
BPHYT_RS23775: BPHYT_RS23775 - phosphonoacetate hydrolase, at 900,484 to 901,773
_RS23775
BPHYT_RS23780: BPHYT_RS23780 - DeoR faimly transcriptional regulator, at 901,770 to 903,221
_RS23780
BPHYT_RS23785: BPHYT_RS23785 - phosphohydrolase, at 903,226 to 903,786
_RS23785
Position (kb) 901
902
903
904 Strain fitness (log2 ratio) -2
-1
0
1
2 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.114 kb on + strand, within BPHYT_RS23775 at 901.114 kb on + strand, within BPHYT_RS23775 at 901.115 kb on - strand, within BPHYT_RS23775 at 901.115 kb on - strand, within BPHYT_RS23775 at 901.132 kb on + strand, within BPHYT_RS23775 at 901.181 kb on - strand, within BPHYT_RS23775 at 901.181 kb on - strand, within BPHYT_RS23775 at 901.300 kb on + strand, within BPHYT_RS23775 at 901.301 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775 at 901.734 kb on + strand at 901.775 kb on + strand at 901.776 kb on - strand at 901.872 kb on + strand at 901.872 kb on + strand at 901.951 kb on - strand, within BPHYT_RS23780 at 902.367 kb on + strand, within BPHYT_RS23780 at 902.368 kb on - strand, within BPHYT_RS23780 at 902.368 kb on - strand, within BPHYT_RS23780 at 902.518 kb on - strand, within BPHYT_RS23780 at 902.616 kb on + strand, within BPHYT_RS23780 at 902.616 kb on + strand, within BPHYT_RS23780 at 902.617 kb on - strand, within BPHYT_RS23780 at 902.617 kb on - strand, within BPHYT_RS23780 at 902.618 kb on + strand, within BPHYT_RS23780 at 902.618 kb on + strand, within BPHYT_RS23780 at 902.696 kb on - strand, within BPHYT_RS23780 at 902.696 kb on - strand, within BPHYT_RS23780 at 902.865 kb on + strand, within BPHYT_RS23780 at 903.152 kb on + strand at 903.152 kb on + strand at 903.185 kb on + strand at 903.219 kb on + strand at 903.283 kb on + strand, within BPHYT_RS23785 at 903.457 kb on + strand, within BPHYT_RS23785 at 903.562 kb on + strand, within BPHYT_RS23785 at 903.621 kb on + strand, within BPHYT_RS23785 at 903.621 kb on + strand, within BPHYT_RS23785 at 903.622 kb on - strand, within BPHYT_RS23785 at 903.684 kb on + strand, within BPHYT_RS23785 at 903.685 kb on - strand, within BPHYT_RS23785 at 903.743 kb on + strand at 903.743 kb on + strand at 903.744 kb on - strand at 903.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 901,039 + BPHYT_RS23775 0.43 +0.7 901,039 + BPHYT_RS23775 0.43 +2.3 901,039 + BPHYT_RS23775 0.43 -0.0 901,114 + BPHYT_RS23775 0.49 +1.2 901,114 + BPHYT_RS23775 0.49 -0.7 901,115 - BPHYT_RS23775 0.49 +0.2 901,115 - BPHYT_RS23775 0.49 +0.7 901,132 + BPHYT_RS23775 0.50 -0.5 901,181 - BPHYT_RS23775 0.54 -0.1 901,181 - BPHYT_RS23775 0.54 -0.4 901,300 + BPHYT_RS23775 0.63 +0.6 901,301 - BPHYT_RS23775 0.63 +1.0 901,373 - BPHYT_RS23775 0.69 -1.8 901,373 - BPHYT_RS23775 0.69 -0.4 901,373 - BPHYT_RS23775 0.69 +2.0 901,734 + -0.6 901,775 + -1.2 901,776 - -1.1 901,872 + -1.2 901,872 + +0.6 901,951 - BPHYT_RS23780 0.12 -0.1 902,367 + BPHYT_RS23780 0.41 +0.3 902,368 - BPHYT_RS23780 0.41 +0.6 902,368 - BPHYT_RS23780 0.41 -1.5 902,518 - BPHYT_RS23780 0.52 -0.3 902,616 + BPHYT_RS23780 0.58 +0.1 902,616 + BPHYT_RS23780 0.58 +0.1 902,617 - BPHYT_RS23780 0.58 +1.5 902,617 - BPHYT_RS23780 0.58 +0.1 902,618 + BPHYT_RS23780 0.58 +0.6 902,618 + BPHYT_RS23780 0.58 -0.3 902,696 - BPHYT_RS23780 0.64 +0.9 902,696 - BPHYT_RS23780 0.64 -0.4 902,865 + BPHYT_RS23780 0.75 +0.7 903,152 + +0.1 903,152 + -1.2 903,185 + +1.1 903,219 + -1.2 903,283 + BPHYT_RS23785 0.10 +0.6 903,457 + BPHYT_RS23785 0.41 +0.1 903,562 + BPHYT_RS23785 0.60 -0.9 903,621 + BPHYT_RS23785 0.70 -0.9 903,621 + BPHYT_RS23785 0.70 -0.7 903,622 - BPHYT_RS23785 0.71 +0.1 903,684 + BPHYT_RS23785 0.82 -0.2 903,685 - BPHYT_RS23785 0.82 -1.3 903,743 + +0.3 903,743 + -1.3 903,744 - -0.5 903,769 - +1.0
Or see this region's nucleotide sequence