Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22530 and BPHYT_RS22535 are separated by 18 nucleotides BPHYT_RS22535 and BPHYT_RS22540 overlap by 8 nucleotides BPHYT_RS22540 and BPHYT_RS22545 are separated by 155 nucleotides
BPHYT_RS22530: BPHYT_RS22530 - N5,N10-methylene tetrahydromethanopterin reductase, at 615,943 to 617,349
_RS22530
BPHYT_RS22535: BPHYT_RS22535 - methionine ABC transporter ATP-binding protein, at 617,368 to 618,528
_RS22535
BPHYT_RS22540: BPHYT_RS22540 - metal ABC transporter permease, at 618,521 to 619,177
_RS22540
BPHYT_RS22545: BPHYT_RS22545 - acyl-CoA dehydrogenase, at 619,333 to 620,535
_RS22545
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1 at 616.913 kb on - strand, within BPHYT_RS22530 at 617.347 kb on + strand at 617.961 kb on + strand, within BPHYT_RS22535 at 618.787 kb on - strand, within BPHYT_RS22540 at 618.976 kb on + strand, within BPHYT_RS22540 at 619.181 kb on + strand at 619.181 kb on + strand at 619.250 kb on - strand at 619.250 kb on - strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 616,913 - BPHYT_RS22530 0.69 +1.2 617,347 + -0.7 617,961 + BPHYT_RS22535 0.51 +1.0 618,787 - BPHYT_RS22540 0.40 -1.0 618,976 + BPHYT_RS22540 0.69 -0.8 619,181 + -0.4 619,181 + -0.5 619,250 - -1.4 619,250 - -0.2 619,257 + -1.1 619,257 + -0.2 619,257 + +0.6 619,261 + +0.8
Or see this region's nucleotide sequence