Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20505 and BPHYT_RS20510 are separated by 127 nucleotides BPHYT_RS20510 and BPHYT_RS20515 are separated by 65 nucleotides BPHYT_RS20515 and BPHYT_RS20520 are separated by 232 nucleotides
BPHYT_RS20505: BPHYT_RS20505 - carboxymethylenebutenolidase, at 163,269 to 163,976
_RS20505
BPHYT_RS20510: BPHYT_RS20510 - oxidoreductase, at 164,104 to 164,850
_RS20510
BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776
_RS20515
BPHYT_RS20520: BPHYT_RS20520 - transcriptional regulator, at 166,009 to 166,908
_RS20520
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1
2
3 at 163.974 kb on + strand at 164.106 kb on - strand at 164.490 kb on - strand, within BPHYT_RS20510 at 165.067 kb on + strand, within BPHYT_RS20515 at 165.128 kb on - strand, within BPHYT_RS20515 at 165.322 kb on + strand, within BPHYT_RS20515 at 165.712 kb on + strand at 165.832 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.914 kb on + strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.915 kb on - strand at 165.919 kb on + strand at 165.973 kb on + strand at 165.979 kb on + strand at 165.980 kb on - strand at 165.980 kb on - strand at 166.031 kb on - strand at 166.478 kb on - strand, within BPHYT_RS20520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 163,974 + +0.5 164,106 - -0.6 164,490 - BPHYT_RS20510 0.52 -0.4 165,067 + BPHYT_RS20515 0.18 -0.1 165,128 - BPHYT_RS20515 0.25 -0.1 165,322 + BPHYT_RS20515 0.47 -0.7 165,712 + -1.1 165,832 + +0.1 165,914 + +0.3 165,914 + -0.1 165,914 + -0.3 165,914 + +0.2 165,914 + +0.8 165,915 - -0.2 165,915 - +0.2 165,915 - +3.0 165,915 - +1.2 165,915 - +0.7 165,915 - -0.2 165,915 - +0.0 165,915 - +0.4 165,919 + +1.1 165,973 + +0.4 165,979 + +0.0 165,980 - +0.4 165,980 - +0.0 166,031 - +0.2 166,478 - BPHYT_RS20520 0.52 -1.7
Or see this region's nucleotide sequence