Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07455 and BPHYT_RS07460 are separated by 23 nucleotides BPHYT_RS07460 and BPHYT_RS07465 are separated by 441 nucleotides BPHYT_RS07465 and BPHYT_RS07470 are separated by 226 nucleotides
BPHYT_RS07455: BPHYT_RS07455 - transcriptional regulator, at 1,694,521 to 1,695,204
_RS07455
BPHYT_RS07460: BPHYT_RS07460 - hypothetical protein, at 1,695,228 to 1,695,581
_RS07460
BPHYT_RS07465: BPHYT_RS07465 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,696,023 to 1,697,360
_RS07465
BPHYT_RS07470: BPHYT_RS07470 - LysR family transcriptional regulator, at 1,697,587 to 1,698,567
_RS07470
Position (kb) 1696
1697
1698 Strain fitness (log2 ratio) -1
0
1 at 1695.162 kb on - strand at 1695.614 kb on + strand at 1695.648 kb on + strand at 1696.020 kb on + strand at 1696.126 kb on + strand at 1696.139 kb on - strand at 1696.603 kb on - strand, within BPHYT_RS07465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,695,162 - -0.8 1,695,614 + -0.4 1,695,648 + +1.0 1,696,020 + -1.4 1,696,126 + -0.1 1,696,139 - +0.0 1,696,603 - BPHYT_RS07465 0.43 -1.1
Or see this region's nucleotide sequence