Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07290

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07280 and BPHYT_RS07285 are separated by 297 nucleotidesBPHYT_RS07285 and BPHYT_RS07290 are separated by 120 nucleotidesBPHYT_RS07290 and BPHYT_RS07295 are separated by 19 nucleotides BPHYT_RS07280: BPHYT_RS07280 - amino acid permease, at 1,651,676 to 1,653,076 _RS07280 BPHYT_RS07285: BPHYT_RS07285 - cytochrome C class I, at 1,653,374 to 1,653,709 _RS07285 BPHYT_RS07290: BPHYT_RS07290 - hypothetical protein, at 1,653,830 to 1,655,647 _RS07290 BPHYT_RS07295: BPHYT_RS07295 - porin, at 1,655,667 to 1,656,707 _RS07295 Position (kb) 1653 1654 1655 1656Strain fitness (log2 ratio) -1 0 1at 1653.032 kb on + strandat 1653.244 kb on - strandat 1653.311 kb on - strandat 1653.809 kb on - strandat 1653.900 kb on + strandat 1653.931 kb on + strandat 1654.517 kb on - strand, within BPHYT_RS07290at 1654.522 kb on + strand, within BPHYT_RS07290at 1654.762 kb on - strand, within BPHYT_RS07290at 1654.911 kb on + strand, within BPHYT_RS07290at 1655.280 kb on + strand, within BPHYT_RS07290at 1655.794 kb on + strand, within BPHYT_RS07295at 1655.858 kb on + strand, within BPHYT_RS07295at 1655.900 kb on - strand, within BPHYT_RS07295at 1656.254 kb on + strand, within BPHYT_RS07295at 1656.314 kb on + strand, within BPHYT_RS07295at 1656.361 kb on + strand, within BPHYT_RS07295

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,653,032 + +0.4
1,653,244 - -0.1
1,653,311 - -1.4
1,653,809 - +1.0
1,653,900 + +0.0
1,653,931 + +0.6
1,654,517 - BPHYT_RS07290 0.38 -1.0
1,654,522 + BPHYT_RS07290 0.38 -0.9
1,654,762 - BPHYT_RS07290 0.51 -0.1
1,654,911 + BPHYT_RS07290 0.59 -0.6
1,655,280 + BPHYT_RS07290 0.80 -1.0
1,655,794 + BPHYT_RS07295 0.12 -0.0
1,655,858 + BPHYT_RS07295 0.18 -0.4
1,655,900 - BPHYT_RS07295 0.22 -0.0
1,656,254 + BPHYT_RS07295 0.56 +0.2
1,656,314 + BPHYT_RS07295 0.62 -1.1
1,656,361 + BPHYT_RS07295 0.67 +0.7

Or see this region's nucleotide sequence