Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06690

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06685 and BPHYT_RS06690 are separated by 23 nucleotidesBPHYT_RS06690 and BPHYT_RS06695 overlap by 1 nucleotidesBPHYT_RS06695 and BPHYT_RS06700 are separated by 42 nucleotides BPHYT_RS06685: BPHYT_RS06685 - NADH:ubiquinone oxidoreductase subunit M, at 1,515,288 to 1,516,778 _RS06685 BPHYT_RS06690: BPHYT_RS06690 - NADH:ubiquinone oxidoreductase subunit N, at 1,516,802 to 1,518,274 _RS06690 BPHYT_RS06695: BPHYT_RS06695 - membrane protein, at 1,518,274 to 1,518,570 _RS06695 BPHYT_RS06700: BPHYT_RS06700 - ADP-ribose pyrophosphatase, at 1,518,613 to 1,519,197 _RS06700 Position (kb) 1516 1517 1518 1519Strain fitness (log2 ratio) -2 -1 0 1 2at 1516.149 kb on + strand, within BPHYT_RS06685at 1516.149 kb on + strand, within BPHYT_RS06685at 1516.720 kb on + strandat 1518.820 kb on + strand, within BPHYT_RS06700at 1518.831 kb on + strand, within BPHYT_RS06700at 1518.929 kb on - strand, within BPHYT_RS06700at 1518.930 kb on + strand, within BPHYT_RS06700at 1518.999 kb on + strand, within BPHYT_RS06700at 1519.000 kb on - strand, within BPHYT_RS06700at 1519.003 kb on + strand, within BPHYT_RS06700at 1519.004 kb on - strand, within BPHYT_RS06700

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,516,149 + BPHYT_RS06685 0.58 -1.9
1,516,149 + BPHYT_RS06685 0.58 +2.0
1,516,720 + -0.3
1,518,820 + BPHYT_RS06700 0.35 -0.8
1,518,831 + BPHYT_RS06700 0.37 -0.1
1,518,929 - BPHYT_RS06700 0.54 -1.0
1,518,930 + BPHYT_RS06700 0.54 -0.7
1,518,999 + BPHYT_RS06700 0.66 -0.2
1,519,000 - BPHYT_RS06700 0.66 +0.2
1,519,003 + BPHYT_RS06700 0.67 -1.3
1,519,004 - BPHYT_RS06700 0.67 -1.3

Or see this region's nucleotide sequence