Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06655

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06650 and BPHYT_RS06655 are separated by 122 nucleotidesBPHYT_RS06655 and BPHYT_RS06660 are separated by 0 nucleotides BPHYT_RS06650: BPHYT_RS06650 - NADH dehydrogenase, at 1,506,602 to 1,507,930 _RS06650 BPHYT_RS06655: BPHYT_RS06655 - NADH dehydrogenase subunit G, at 1,508,053 to 1,510,386 _RS06655 BPHYT_RS06660: BPHYT_RS06660 - NADH-quinone oxidoreductase subunit H, at 1,510,387 to 1,511,451 _RS06660 Position (kb) 1508 1509 1510 1511Strain fitness (log2 ratio) -1 0 1 2at 1507.944 kb on + strandat 1507.952 kb on + strandat 1507.952 kb on + strandat 1507.952 kb on + strandat 1508.027 kb on + strandat 1508.035 kb on + strandat 1510.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,507,944 + +0.7
1,507,952 + -1.2
1,507,952 + -0.3
1,507,952 + +1.0
1,508,027 + +2.2
1,508,035 + +1.1
1,510,384 + -0.0

Or see this region's nucleotide sequence