Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03695

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03685 and BPHYT_RS03690 are separated by 19 nucleotidesBPHYT_RS03690 and BPHYT_RS03695 are separated by 33 nucleotidesBPHYT_RS03695 and BPHYT_RS03700 are separated by 140 nucleotides BPHYT_RS03685: BPHYT_RS03685 - Tol system periplasmic component YbgF, at 838,390 to 839,139 _RS03685 BPHYT_RS03690: BPHYT_RS03690 - membrane protein, at 839,159 to 839,668 _RS03690 BPHYT_RS03695: BPHYT_RS03695 - protein TolB, at 839,702 to 840,994 _RS03695 BPHYT_RS03700: BPHYT_RS03700 - cell envelope biogenesis protein TonB, at 841,135 to 842,169 _RS03700 Position (kb) 839 840 841Strain fitness (log2 ratio) -2 -1 0 1at 839.157 kb on - strandat 839.160 kb on + strandat 839.690 kb on - strandat 839.711 kb on - strandat 841.062 kb on - strandat 841.126 kb on + strandat 841.126 kb on + strandat 841.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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839,157 - +0.7
839,160 + -2.0
839,690 - -0.6
839,711 - -2.0
841,062 - +0.2
841,126 + +0.4
841,126 + -1.0
841,127 - -1.2

Or see this region's nucleotide sequence