Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03035

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03025 and BPHYT_RS03030 are separated by 71 nucleotidesBPHYT_RS03030 and BPHYT_RS03035 overlap by 4 nucleotidesBPHYT_RS03035 and BPHYT_RS03040 overlap by 14 nucleotidesBPHYT_RS03040 and BPHYT_RS03045 are separated by 200 nucleotides BPHYT_RS03025: BPHYT_RS03025 - methyl-accepting chemotaxis protein, at 673,714 to 675,363 _RS03025 BPHYT_RS03030: BPHYT_RS03030 - cytochrome C, at 675,435 to 676,244 _RS03030 BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866 _RS03035 BPHYT_RS03040: BPHYT_RS03040 - cytochrome C oxidase subunit II, at 677,853 to 678,425 _RS03040 BPHYT_RS03045: BPHYT_RS03045 - alcohol dehydrogenase, at 678,626 to 680,011 _RS03045 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 675.361 kb on + strandat 675.361 kb on + strandat 675.365 kb on - strandat 675.437 kb on - strandat 675.451 kb on + strandat 675.452 kb on - strandat 675.455 kb on - strandat 675.527 kb on + strand, within BPHYT_RS03030at 675.527 kb on + strand, within BPHYT_RS03030at 675.755 kb on - strand, within BPHYT_RS03030at 675.860 kb on - strand, within BPHYT_RS03030at 675.860 kb on - strand, within BPHYT_RS03030at 675.918 kb on + strand, within BPHYT_RS03030at 675.919 kb on - strand, within BPHYT_RS03030at 676.058 kb on - strand, within BPHYT_RS03030at 676.156 kb on - strand, within BPHYT_RS03030at 676.317 kb on + strandat 676.317 kb on + strandat 676.318 kb on - strandat 676.318 kb on - strandat 676.467 kb on + strand, within BPHYT_RS03035at 676.472 kb on - strand, within BPHYT_RS03035at 676.472 kb on - strand, within BPHYT_RS03035at 676.570 kb on - strand, within BPHYT_RS03035at 676.605 kb on + strand, within BPHYT_RS03035at 676.731 kb on + strand, within BPHYT_RS03035at 676.731 kb on + strand, within BPHYT_RS03035at 676.732 kb on - strand, within BPHYT_RS03035at 676.816 kb on - strand, within BPHYT_RS03035at 677.178 kb on + strand, within BPHYT_RS03035at 677.179 kb on - strand, within BPHYT_RS03035at 677.179 kb on - strand, within BPHYT_RS03035at 677.188 kb on + strand, within BPHYT_RS03035at 677.188 kb on + strand, within BPHYT_RS03035at 677.189 kb on - strandat 677.190 kb on + strand, within BPHYT_RS03035at 677.190 kb on + strand, within BPHYT_RS03035at 677.190 kb on + strand, within BPHYT_RS03035at 677.190 kb on + strand, within BPHYT_RS03035at 677.191 kb on - strand, within BPHYT_RS03035at 677.212 kb on - strand, within BPHYT_RS03035at 677.484 kb on + strand, within BPHYT_RS03035at 677.484 kb on + strand, within BPHYT_RS03035at 677.484 kb on + strand, within BPHYT_RS03035at 677.485 kb on - strand, within BPHYT_RS03035at 677.487 kb on + strand, within BPHYT_RS03035at 677.523 kb on + strand, within BPHYT_RS03035at 677.524 kb on - strand, within BPHYT_RS03035at 677.524 kb on - strand, within BPHYT_RS03035at 677.692 kb on - strand, within BPHYT_RS03035at 677.692 kb on - strand, within BPHYT_RS03035at 677.692 kb on - strand, within BPHYT_RS03035at 678.465 kb on + strandat 678.466 kb on - strandat 678.604 kb on - strandat 678.604 kb on - strandat 678.708 kb on + strandat 678.708 kb on + strandat 678.708 kb on + strandat 678.709 kb on - strandat 678.709 kb on - strandat 678.709 kb on - strandat 678.709 kb on - strandat 678.709 kb on - strandat 678.709 kb on - strandat 678.768 kb on + strand, within BPHYT_RS03045

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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675,361 + -1.3
675,361 + +0.2
675,365 - +0.1
675,437 - +0.8
675,451 + +0.5
675,452 - -0.6
675,455 - -0.6
675,527 + BPHYT_RS03030 0.11 -0.6
675,527 + BPHYT_RS03030 0.11 +0.8
675,755 - BPHYT_RS03030 0.40 -1.4
675,860 - BPHYT_RS03030 0.52 -0.3
675,860 - BPHYT_RS03030 0.52 +1.1
675,918 + BPHYT_RS03030 0.60 +1.4
675,919 - BPHYT_RS03030 0.60 -1.8
676,058 - BPHYT_RS03030 0.77 -0.1
676,156 - BPHYT_RS03030 0.89 -1.3
676,317 + -0.1
676,317 + -1.2
676,318 - -1.5
676,318 - +0.2
676,467 + BPHYT_RS03035 0.14 -0.5
676,472 - BPHYT_RS03035 0.14 -0.3
676,472 - BPHYT_RS03035 0.14 +0.3
676,570 - BPHYT_RS03035 0.20 -0.8
676,605 + BPHYT_RS03035 0.22 +0.6
676,731 + BPHYT_RS03035 0.30 -1.5
676,731 + BPHYT_RS03035 0.30 -0.0
676,732 - BPHYT_RS03035 0.30 -0.2
676,816 - BPHYT_RS03035 0.35 -0.5
677,178 + BPHYT_RS03035 0.58 -0.3
677,179 - BPHYT_RS03035 0.58 -1.0
677,179 - BPHYT_RS03035 0.58 -0.3
677,188 + BPHYT_RS03035 0.58 -0.9
677,188 + BPHYT_RS03035 0.58 -0.4
677,189 - -0.5
677,190 + BPHYT_RS03035 0.58 -1.9
677,190 + BPHYT_RS03035 0.58 +1.6
677,190 + BPHYT_RS03035 0.58 -0.0
677,190 + BPHYT_RS03035 0.58 +0.2
677,191 - BPHYT_RS03035 0.58 +1.3
677,212 - BPHYT_RS03035 0.60 -1.3
677,484 + BPHYT_RS03035 0.76 -1.1
677,484 + BPHYT_RS03035 0.76 +0.5
677,484 + BPHYT_RS03035 0.76 -0.8
677,485 - BPHYT_RS03035 0.77 +0.0
677,487 + BPHYT_RS03035 0.77 +2.1
677,523 + BPHYT_RS03035 0.79 -0.2
677,524 - BPHYT_RS03035 0.79 -0.5
677,524 - BPHYT_RS03035 0.79 -0.3
677,692 - BPHYT_RS03035 0.89 +1.5
677,692 - BPHYT_RS03035 0.89 +1.1
677,692 - BPHYT_RS03035 0.89 -0.3
678,465 + -1.9
678,466 - +5.3
678,604 - +0.5
678,604 - +0.4
678,708 + +1.5
678,708 + -0.3
678,708 + +1.3
678,709 - -0.7
678,709 - +0.2
678,709 - -0.5
678,709 - +0.3
678,709 - +0.3
678,709 - +0.8
678,768 + BPHYT_RS03045 0.10 -0.4

Or see this region's nucleotide sequence