Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01280 and BPHYT_RS01285 are separated by 663 nucleotides BPHYT_RS01285 and BPHYT_RS01290 are separated by 107 nucleotides
BPHYT_RS01280: BPHYT_RS01280 - hypothetical protein, at 293,506 to 293,739
_RS01280
BPHYT_RS01285: BPHYT_RS01285 - polyketide cyclase, at 294,403 to 294,813
_RS01285
BPHYT_RS01290: BPHYT_RS01290 - FAD dependent oxidoreductase, at 294,921 to 296,360
_RS01290
Position (kb) 294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.460 kb on + strand at 293.489 kb on + strand at 293.687 kb on - strand, within BPHYT_RS01280 at 293.779 kb on + strand at 293.780 kb on - strand at 294.040 kb on + strand at 294.067 kb on - strand at 294.166 kb on + strand at 294.167 kb on - strand at 294.183 kb on - strand at 294.210 kb on - strand at 294.301 kb on + strand at 294.302 kb on - strand at 294.306 kb on - strand at 294.337 kb on - strand at 294.383 kb on + strand at 294.383 kb on + strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.439 kb on + strand at 294.439 kb on + strand at 294.494 kb on + strand, within BPHYT_RS01285 at 294.494 kb on + strand, within BPHYT_RS01285 at 294.496 kb on + strand, within BPHYT_RS01285 at 294.497 kb on - strand, within BPHYT_RS01285 at 294.497 kb on - strand, within BPHYT_RS01285 at 294.497 kb on - strand at 294.541 kb on + strand, within BPHYT_RS01285 at 294.542 kb on - strand, within BPHYT_RS01285 at 294.640 kb on + strand at 294.776 kb on - strand at 294.841 kb on + strand at 294.880 kb on - strand at 294.892 kb on - strand at 294.892 kb on - strand at 295.094 kb on + strand, within BPHYT_RS01290 at 295.094 kb on + strand, within BPHYT_RS01290 at 295.095 kb on - strand, within BPHYT_RS01290 at 295.097 kb on + strand, within BPHYT_RS01290 at 295.097 kb on + strand, within BPHYT_RS01290 at 295.098 kb on - strand, within BPHYT_RS01290 at 295.152 kb on + strand, within BPHYT_RS01290 at 295.153 kb on - strand, within BPHYT_RS01290 at 295.218 kb on + strand, within BPHYT_RS01290 at 295.284 kb on - strand, within BPHYT_RS01290 at 295.285 kb on + strand, within BPHYT_RS01290 at 295.285 kb on + strand, within BPHYT_RS01290 at 295.286 kb on - strand, within BPHYT_RS01290 at 295.286 kb on - strand, within BPHYT_RS01290 at 295.336 kb on + strand, within BPHYT_RS01290 at 295.353 kb on - strand, within BPHYT_RS01290 at 295.353 kb on - strand, within BPHYT_RS01290 at 295.486 kb on - strand, within BPHYT_RS01290 at 295.486 kb on - strand, within BPHYT_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 293,460 + -0.7 293,489 + -0.7 293,687 - BPHYT_RS01280 0.77 -1.7 293,779 + -1.0 293,780 - +1.0 294,040 + -1.4 294,067 - -0.7 294,166 + -0.4 294,167 - -0.0 294,183 - +0.0 294,210 - -0.6 294,301 + -0.9 294,302 - +0.0 294,306 - -1.2 294,337 - +0.0 294,383 + -0.7 294,383 + -1.4 294,384 - -3.4 294,384 - +0.6 294,384 - +2.0 294,384 - +1.2 294,384 - -1.2 294,384 - -0.2 294,439 + -1.5 294,439 + -0.4 294,494 + BPHYT_RS01285 0.22 -1.0 294,494 + BPHYT_RS01285 0.22 -0.7 294,496 + BPHYT_RS01285 0.23 -0.0 294,497 - BPHYT_RS01285 0.23 -0.9 294,497 - BPHYT_RS01285 0.23 -1.7 294,497 - -0.5 294,541 + BPHYT_RS01285 0.34 -0.6 294,542 - BPHYT_RS01285 0.34 -1.2 294,640 + +1.3 294,776 - -0.5 294,841 + -2.0 294,880 - -1.0 294,892 - -1.2 294,892 - -1.5 295,094 + BPHYT_RS01290 0.12 -1.6 295,094 + BPHYT_RS01290 0.12 -0.1 295,095 - BPHYT_RS01290 0.12 -0.8 295,097 + BPHYT_RS01290 0.12 +0.3 295,097 + BPHYT_RS01290 0.12 -0.5 295,098 - BPHYT_RS01290 0.12 -2.5 295,152 + BPHYT_RS01290 0.16 +1.3 295,153 - BPHYT_RS01290 0.16 -0.5 295,218 + BPHYT_RS01290 0.21 -1.6 295,284 - BPHYT_RS01290 0.25 -0.7 295,285 + BPHYT_RS01290 0.25 +2.1 295,285 + BPHYT_RS01290 0.25 +1.5 295,286 - BPHYT_RS01290 0.25 -0.4 295,286 - BPHYT_RS01290 0.25 -1.5 295,336 + BPHYT_RS01290 0.29 -0.5 295,353 - BPHYT_RS01290 0.30 -1.1 295,353 - BPHYT_RS01290 0.30 -1.4 295,486 - BPHYT_RS01290 0.39 -1.3 295,486 - BPHYT_RS01290 0.39 -0.1
Or see this region's nucleotide sequence