Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00655

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00650 and BPHYT_RS00655 are separated by 25 nucleotidesBPHYT_RS00655 and BPHYT_RS00660 are separated by 2 nucleotides BPHYT_RS00650: BPHYT_RS00650 - acyl-CoA ligase, at 153,915 to 155,534 _RS00650 BPHYT_RS00655: BPHYT_RS00655 - 3-oxoacyl-ACP synthase, at 155,560 to 156,507 _RS00655 BPHYT_RS00660: BPHYT_RS00660 - 3-oxoacyl-ACP synthase, at 156,510 to 157,532 _RS00660 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1at 154.591 kb on + strand, within BPHYT_RS00650at 154.591 kb on + strand, within BPHYT_RS00650at 154.592 kb on - strand, within BPHYT_RS00650at 154.667 kb on + strand, within BPHYT_RS00650at 154.668 kb on - strand, within BPHYT_RS00650at 154.678 kb on + strand, within BPHYT_RS00650at 154.722 kb on - strand, within BPHYT_RS00650at 155.007 kb on - strand, within BPHYT_RS00650at 155.007 kb on - strand, within BPHYT_RS00650at 155.008 kb on + strand, within BPHYT_RS00650at 155.008 kb on + strand, within BPHYT_RS00650at 155.008 kb on + strand, within BPHYT_RS00650at 155.008 kb on + strand, within BPHYT_RS00650at 155.009 kb on - strand, within BPHYT_RS00650at 155.009 kb on - strand, within BPHYT_RS00650at 155.009 kb on - strand, within BPHYT_RS00650at 155.446 kb on + strandat 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.711 kb on + strand, within BPHYT_RS00655at 155.858 kb on + strand, within BPHYT_RS00655at 155.859 kb on - strand, within BPHYT_RS00655at 155.859 kb on - strand, within BPHYT_RS00655at 155.909 kb on + strand, within BPHYT_RS00655at 155.924 kb on + strand, within BPHYT_RS00655at 156.268 kb on - strand, within BPHYT_RS00655at 156.512 kb on - strandat 156.523 kb on + strandat 156.524 kb on - strandat 156.524 kb on - strandat 156.524 kb on - strandat 156.615 kb on + strand, within BPHYT_RS00660at 156.615 kb on + strand, within BPHYT_RS00660at 156.615 kb on + strand, within BPHYT_RS00660at 156.648 kb on + strand, within BPHYT_RS00660at 156.649 kb on - strand, within BPHYT_RS00660at 156.649 kb on - strand, within BPHYT_RS00660at 156.649 kb on - strand, within BPHYT_RS00660at 156.652 kb on + strand, within BPHYT_RS00660at 156.734 kb on + strand, within BPHYT_RS00660at 156.734 kb on + strand, within BPHYT_RS00660at 156.735 kb on - strand, within BPHYT_RS00660at 156.869 kb on + strand, within BPHYT_RS00660at 157.152 kb on + strand, within BPHYT_RS00660at 157.298 kb on - strand, within BPHYT_RS00660at 157.384 kb on + strand, within BPHYT_RS00660at 157.385 kb on - strand, within BPHYT_RS00660at 157.437 kb on + strandat 157.474 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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154,591 + BPHYT_RS00650 0.42 +0.3
154,591 + BPHYT_RS00650 0.42 +0.1
154,592 - BPHYT_RS00650 0.42 -0.1
154,667 + BPHYT_RS00650 0.46 +0.5
154,668 - BPHYT_RS00650 0.46 -0.5
154,678 + BPHYT_RS00650 0.47 -0.1
154,722 - BPHYT_RS00650 0.50 +0.2
155,007 - BPHYT_RS00650 0.67 -0.0
155,007 - BPHYT_RS00650 0.67 +0.9
155,008 + BPHYT_RS00650 0.67 +0.1
155,008 + BPHYT_RS00650 0.67 +0.4
155,008 + BPHYT_RS00650 0.67 -0.6
155,008 + BPHYT_RS00650 0.67 +0.6
155,009 - BPHYT_RS00650 0.68 -0.8
155,009 - BPHYT_RS00650 0.68 +1.2
155,009 - BPHYT_RS00650 0.68 -0.7
155,446 + -0.1
155,711 + BPHYT_RS00655 0.16 -1.0
155,711 + BPHYT_RS00655 0.16 -0.3
155,711 + BPHYT_RS00655 0.16 +0.3
155,711 + BPHYT_RS00655 0.16 +0.8
155,711 + BPHYT_RS00655 0.16 +0.3
155,711 + BPHYT_RS00655 0.16 -0.2
155,711 + BPHYT_RS00655 0.16 +0.2
155,711 + BPHYT_RS00655 0.16 +0.1
155,858 + BPHYT_RS00655 0.31 +1.4
155,859 - BPHYT_RS00655 0.32 +1.0
155,859 - BPHYT_RS00655 0.32 -0.1
155,909 + BPHYT_RS00655 0.37 +0.6
155,924 + BPHYT_RS00655 0.38 +0.6
156,268 - BPHYT_RS00655 0.75 +0.8
156,512 - -1.3
156,523 + +0.1
156,524 - -3.1
156,524 - -0.6
156,524 - +1.2
156,615 + BPHYT_RS00660 0.10 +1.5
156,615 + BPHYT_RS00660 0.10 -0.2
156,615 + BPHYT_RS00660 0.10 +0.9
156,648 + BPHYT_RS00660 0.13 +0.3
156,649 - BPHYT_RS00660 0.14 -0.0
156,649 - BPHYT_RS00660 0.14 -0.4
156,649 - BPHYT_RS00660 0.14 +0.0
156,652 + BPHYT_RS00660 0.14 +0.4
156,734 + BPHYT_RS00660 0.22 -0.2
156,734 + BPHYT_RS00660 0.22 +0.2
156,735 - BPHYT_RS00660 0.22 +0.0
156,869 + BPHYT_RS00660 0.35 +0.1
157,152 + BPHYT_RS00660 0.63 +1.5
157,298 - BPHYT_RS00660 0.77 -0.1
157,384 + BPHYT_RS00660 0.85 -0.0
157,385 - BPHYT_RS00660 0.86 -0.6
157,437 + -0.8
157,474 + -0.5

Or see this region's nucleotide sequence