Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00360 and BPHYT_RS00365 are separated by 176 nucleotides BPHYT_RS00365 and BPHYT_RS00370 are separated by 26 nucleotides BPHYT_RS00370 and BPHYT_RS00375 overlap by 4 nucleotides
BPHYT_RS00360: BPHYT_RS00360 - protoporphyrinogen oxidase, at 91,249 to 92,604
_RS00360
BPHYT_RS00365: BPHYT_RS00365 - ABC transporter substrate-binding protein, at 92,781 to 93,749
_RS00365
BPHYT_RS00370: BPHYT_RS00370 - ABC transporter ATP-binding protein, at 93,776 to 94,582
_RS00370
BPHYT_RS00375: BPHYT_RS00375 - sugar ABC transporter, at 94,579 to 95,499
_RS00375
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.854 kb on + strand, within BPHYT_RS00360 at 91.874 kb on + strand, within BPHYT_RS00360 at 91.874 kb on + strand, within BPHYT_RS00360 at 91.875 kb on - strand, within BPHYT_RS00360 at 92.065 kb on - strand, within BPHYT_RS00360 at 92.066 kb on + strand, within BPHYT_RS00360 at 92.067 kb on - strand, within BPHYT_RS00360 at 92.119 kb on + strand, within BPHYT_RS00360 at 92.120 kb on - strand, within BPHYT_RS00360 at 92.242 kb on + strand, within BPHYT_RS00360 at 92.243 kb on - strand, within BPHYT_RS00360 at 92.328 kb on - strand, within BPHYT_RS00360 at 92.579 kb on + strand at 92.707 kb on + strand at 93.105 kb on - strand, within BPHYT_RS00365 at 93.424 kb on - strand, within BPHYT_RS00365 at 93.493 kb on + strand, within BPHYT_RS00365 at 93.549 kb on + strand, within BPHYT_RS00365 at 93.660 kb on + strand at 93.661 kb on - strand at 93.910 kb on - strand, within BPHYT_RS00370 at 93.968 kb on - strand, within BPHYT_RS00370 at 93.968 kb on - strand, within BPHYT_RS00370 at 94.009 kb on + strand, within BPHYT_RS00370 at 94.041 kb on - strand, within BPHYT_RS00370 at 94.442 kb on + strand, within BPHYT_RS00370 at 94.681 kb on - strand, within BPHYT_RS00375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 91,854 + BPHYT_RS00360 0.45 -2.3 91,874 + BPHYT_RS00360 0.46 -0.3 91,874 + BPHYT_RS00360 0.46 -2.4 91,875 - BPHYT_RS00360 0.46 +0.4 92,065 - BPHYT_RS00360 0.60 -1.0 92,066 + BPHYT_RS00360 0.60 +0.0 92,067 - BPHYT_RS00360 0.60 -1.0 92,119 + BPHYT_RS00360 0.64 +0.2 92,120 - BPHYT_RS00360 0.64 -0.7 92,242 + BPHYT_RS00360 0.73 -1.2 92,243 - BPHYT_RS00360 0.73 -0.3 92,328 - BPHYT_RS00360 0.80 -0.7 92,579 + -0.2 92,707 + -1.8 93,105 - BPHYT_RS00365 0.33 +0.4 93,424 - BPHYT_RS00365 0.66 -1.1 93,493 + BPHYT_RS00365 0.73 -0.3 93,549 + BPHYT_RS00365 0.79 -0.2 93,660 + -0.3 93,661 - +1.7 93,910 - BPHYT_RS00370 0.17 -1.6 93,968 - BPHYT_RS00370 0.24 -1.0 93,968 - BPHYT_RS00370 0.24 -1.8 94,009 + BPHYT_RS00370 0.29 -0.0 94,041 - BPHYT_RS00370 0.33 +0.0 94,442 + BPHYT_RS00370 0.83 -0.9 94,681 - BPHYT_RS00375 0.11 -1.8
Or see this region's nucleotide sequence