Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28270 and BPHYT_RS28275 are separated by 134 nucleotides BPHYT_RS28275 and BPHYT_RS28280 are separated by 191 nucleotides BPHYT_RS28280 and BPHYT_RS28285 are separated by 123 nucleotides
BPHYT_RS28270: BPHYT_RS28270 - ABC transporter substrate-binding protein, at 1,898,913 to 1,900,034
_RS28270
BPHYT_RS28275: BPHYT_RS28275 - glycerol acyltransferase, at 1,900,169 to 1,900,879
_RS28275
BPHYT_RS28280: BPHYT_RS28280 - hypothetical protein, at 1,901,071 to 1,901,385
_RS28280
BPHYT_RS28285: BPHYT_RS28285 - MFS transporter, at 1,901,509 to 1,902,756
_RS28285
Position (kb) 1900
1901 Strain fitness (log2 ratio) -1
0
1
2 at 1899.226 kb on + strand, within BPHYT_RS28270 at 1899.691 kb on + strand, within BPHYT_RS28270 at 1899.728 kb on - strand, within BPHYT_RS28270 at 1900.070 kb on - strand at 1900.273 kb on + strand, within BPHYT_RS28275 at 1900.274 kb on - strand, within BPHYT_RS28275 at 1900.274 kb on - strand, within BPHYT_RS28275 at 1900.850 kb on - strand at 1900.950 kb on + strand at 1900.951 kb on - strand at 1900.951 kb on - strand at 1901.305 kb on + strand, within BPHYT_RS28280 at 1901.305 kb on + strand, within BPHYT_RS28280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,899,226 + BPHYT_RS28270 0.28 +0.2 1,899,691 + BPHYT_RS28270 0.69 -1.5 1,899,728 - BPHYT_RS28270 0.73 +0.5 1,900,070 - +0.1 1,900,273 + BPHYT_RS28275 0.15 -0.4 1,900,274 - BPHYT_RS28275 0.15 -0.4 1,900,274 - BPHYT_RS28275 0.15 +0.4 1,900,850 - +2.0 1,900,950 + -0.4 1,900,951 - -0.5 1,900,951 - -1.0 1,901,305 + BPHYT_RS28280 0.74 -0.2 1,901,305 + BPHYT_RS28280 0.74 -0.2
Or see this region's nucleotide sequence