Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26815 and BPHYT_RS26820 overlap by 4 nucleotides BPHYT_RS26820 and BPHYT_RS26825 are separated by 131 nucleotides BPHYT_RS26825 and BPHYT_RS26830 are separated by 77 nucleotides
BPHYT_RS26815: BPHYT_RS26815 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,588,287 to 1,589,303
_RS26815
BPHYT_RS26820: BPHYT_RS26820 - LysR family transcriptional regulator, at 1,589,300 to 1,590,187
_RS26820
BPHYT_RS26825: BPHYT_RS26825 - quercetin 2,3-dioxygenase, at 1,590,319 to 1,591,044
_RS26825
BPHYT_RS26830: BPHYT_RS26830 - membrane protein, at 1,591,122 to 1,591,535
_RS26830
Position (kb) 1589
1590
1591 Strain fitness (log2 ratio) -1
0
1 at 1588.455 kb on + strand, within BPHYT_RS26815 at 1588.753 kb on - strand, within BPHYT_RS26815 at 1588.860 kb on + strand, within BPHYT_RS26815 at 1589.241 kb on + strand at 1589.242 kb on - strand at 1589.277 kb on + strand at 1589.383 kb on - strand at 1589.616 kb on + strand, within BPHYT_RS26820 at 1589.679 kb on + strand, within BPHYT_RS26820 at 1590.139 kb on + strand at 1590.254 kb on + strand at 1590.255 kb on - strand at 1590.628 kb on + strand, within BPHYT_RS26825 at 1590.629 kb on - strand, within BPHYT_RS26825 at 1590.815 kb on - strand, within BPHYT_RS26825 at 1591.063 kb on + strand at 1591.063 kb on + strand at 1591.064 kb on - strand at 1591.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,588,455 + BPHYT_RS26815 0.17 +1.5 1,588,753 - BPHYT_RS26815 0.46 +1.1 1,588,860 + BPHYT_RS26815 0.56 +0.2 1,589,241 + -0.3 1,589,242 - +0.4 1,589,277 + -0.4 1,589,383 - +0.3 1,589,616 + BPHYT_RS26820 0.36 -1.3 1,589,679 + BPHYT_RS26820 0.43 -1.4 1,590,139 + +0.3 1,590,254 + -0.8 1,590,255 - +0.3 1,590,628 + BPHYT_RS26825 0.43 +1.7 1,590,629 - BPHYT_RS26825 0.43 +0.5 1,590,815 - BPHYT_RS26825 0.68 +0.3 1,591,063 + -0.7 1,591,063 + -0.5 1,591,064 - -0.2 1,591,130 + -0.7
Or see this region's nucleotide sequence