Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26800 and BPHYT_RS26805 are separated by 44 nucleotides BPHYT_RS26805 and BPHYT_RS26810 are separated by 148 nucleotides BPHYT_RS26810 and BPHYT_RS26815 are separated by 164 nucleotides
BPHYT_RS26800: BPHYT_RS26800 - methionine sulfoxide reductase A, at 1,586,152 to 1,586,877
_RS26800
BPHYT_RS26805: BPHYT_RS26805 - methionine sulfoxide reductase B, at 1,586,922 to 1,587,446
_RS26805
BPHYT_RS26810: BPHYT_RS26810 - AsnC family transcriptional regulator, at 1,587,595 to 1,588,122
_RS26810
BPHYT_RS26815: BPHYT_RS26815 - 1-aminocyclopropane-1-carboxylate deaminase, at 1,588,287 to 1,589,303
_RS26815
Position (kb) 1587
1588
1589 Strain fitness (log2 ratio) -1
0
1 at 1586.651 kb on - strand, within BPHYT_RS26800 at 1586.899 kb on - strand at 1587.597 kb on - strand at 1588.455 kb on + strand, within BPHYT_RS26815 at 1588.753 kb on - strand, within BPHYT_RS26815 at 1588.860 kb on + strand, within BPHYT_RS26815
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,586,651 - BPHYT_RS26800 0.69 -0.2 1,586,899 - +1.2 1,587,597 - +1.2 1,588,455 + BPHYT_RS26815 0.17 +1.5 1,588,753 - BPHYT_RS26815 0.46 +1.1 1,588,860 + BPHYT_RS26815 0.56 +0.2
Or see this region's nucleotide sequence