Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23820 and BPHYT_RS23825 are separated by 170 nucleotides BPHYT_RS23825 and BPHYT_RS23830 are separated by 190 nucleotides BPHYT_RS23830 and BPHYT_RS23835 are separated by 73 nucleotides BPHYT_RS23835 and BPHYT_RS23840 are separated by 161 nucleotides
BPHYT_RS23820: BPHYT_RS23820 - fusaric acid resistance protein, at 911,164 to 913,332
_RS23820
BPHYT_RS23825: BPHYT_RS23825 - hypothetical protein, at 913,503 to 913,718
_RS23825
BPHYT_RS23830: BPHYT_RS23830 - acetyl-CoA hydrolase, at 913,909 to 915,423
_RS23830
BPHYT_RS23835: BPHYT_RS23835 - membrane protein, at 915,497 to 915,751
_RS23835
BPHYT_RS23840: BPHYT_RS23840 - methyltransferase, at 915,913 to 916,620
_RS23840
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.373 kb on - strand at 913.430 kb on - strand at 913.431 kb on + strand at 913.432 kb on - strand at 913.486 kb on - strand at 913.607 kb on + strand, within BPHYT_RS23825 at 913.649 kb on + strand, within BPHYT_RS23825 at 913.650 kb on - strand, within BPHYT_RS23825 at 913.704 kb on + strand at 913.736 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.745 kb on - strand at 913.890 kb on + strand at 913.912 kb on + strand at 914.301 kb on + strand, within BPHYT_RS23830 at 914.658 kb on - strand, within BPHYT_RS23830 at 915.001 kb on + strand, within BPHYT_RS23830 at 915.369 kb on + strand at 915.477 kb on + strand at 915.799 kb on + strand at 915.851 kb on + strand at 915.852 kb on - strand at 916.042 kb on - strand at 916.081 kb on - strand, within BPHYT_RS23840 at 916.081 kb on - strand at 916.112 kb on + strand, within BPHYT_RS23840 at 916.112 kb on + strand, within BPHYT_RS23840 at 916.113 kb on - strand, within BPHYT_RS23840 at 916.181 kb on + strand, within BPHYT_RS23840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 913,373 - +1.7 913,430 - +0.2 913,431 + -0.2 913,432 - +0.3 913,486 - -0.3 913,607 + BPHYT_RS23825 0.48 -0.2 913,649 + BPHYT_RS23825 0.68 -1.8 913,650 - BPHYT_RS23825 0.68 +0.8 913,704 + +0.3 913,736 - -0.1 913,745 - +0.4 913,745 - +1.4 913,745 - +1.2 913,890 + +0.0 913,912 + -0.1 914,301 + BPHYT_RS23830 0.26 +0.7 914,658 - BPHYT_RS23830 0.49 +1.8 915,001 + BPHYT_RS23830 0.72 -0.2 915,369 + -1.6 915,477 + -1.3 915,799 + +0.5 915,851 + -0.6 915,852 - +0.3 916,042 - +1.1 916,081 - BPHYT_RS23840 0.24 -1.6 916,081 - +0.8 916,112 + BPHYT_RS23840 0.28 +0.7 916,112 + BPHYT_RS23840 0.28 -0.6 916,113 - BPHYT_RS23840 0.28 +0.6 916,181 + BPHYT_RS23840 0.38 -0.9
Or see this region's nucleotide sequence