Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22140

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22140 and BPHYT_RS22145 are separated by 146 nucleotidesBPHYT_RS22145 and BPHYT_RS22150 overlap by 4 nucleotides BPHYT_RS22140: BPHYT_RS22140 - hypothetical protein, at 527,467 to 528,807 _RS22140 BPHYT_RS22145: BPHYT_RS22145 - phosphoesterase, at 528,954 to 529,613 _RS22145 BPHYT_RS22150: BPHYT_RS22150 - DEAD/DEAH box helicase, at 529,610 to 532,255 _RS22150 Position (kb) 527 528 529Strain fitness (log2 ratio) -1 0 1at 529.225 kb on + strand, within BPHYT_RS22145at 529.226 kb on - strand, within BPHYT_RS22145

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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529,225 + BPHYT_RS22145 0.41 +0.5
529,226 - BPHYT_RS22145 0.41 +0.9

Or see this region's nucleotide sequence