Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides BPHYT_RS22025 and BPHYT_RS22030 are separated by 176 nucleotides
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784
_RS22025
BPHYT_RS22030: BPHYT_RS22030 - peptide ABC transporter ATP-binding protein, at 497,961 to 498,986
_RS22030
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1
2
3 at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020 at 496.262 kb on + strand at 496.332 kb on - strand at 496.506 kb on - strand, within BPHYT_RS22025 at 496.522 kb on - strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.587 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.748 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.851 kb on - strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.928 kb on + strand, within BPHYT_RS22025 at 497.109 kb on - strand, within BPHYT_RS22025 at 497.148 kb on - strand, within BPHYT_RS22025 at 497.342 kb on + strand, within BPHYT_RS22025 at 497.375 kb on + strand, within BPHYT_RS22025 at 497.640 kb on + strand at 497.681 kb on + strand at 497.789 kb on + strand at 497.963 kb on - strand at 498.200 kb on - strand, within BPHYT_RS22030 at 498.221 kb on - strand, within BPHYT_RS22030 at 498.263 kb on - strand, within BPHYT_RS22030 at 498.693 kb on - strand, within BPHYT_RS22030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 495,226 - -1.0 495,572 + BPHYT_RS22020 0.35 +0.6 495,841 + BPHYT_RS22020 0.66 -0.1 496,262 + -0.6 496,332 - +0.3 496,506 - BPHYT_RS22025 0.20 -0.5 496,522 - BPHYT_RS22025 0.21 +3.0 496,559 + BPHYT_RS22025 0.23 +0.4 496,559 + BPHYT_RS22025 0.23 +1.4 496,587 - BPHYT_RS22025 0.25 -0.2 496,591 - BPHYT_RS22025 0.25 -0.4 496,591 - BPHYT_RS22025 0.25 +1.6 496,748 + BPHYT_RS22025 0.35 -0.7 496,850 + BPHYT_RS22025 0.41 +1.2 496,850 + BPHYT_RS22025 0.41 -0.0 496,851 - BPHYT_RS22025 0.41 -0.1 496,898 + BPHYT_RS22025 0.44 +1.5 496,898 + BPHYT_RS22025 0.44 +0.2 496,898 + BPHYT_RS22025 0.44 +1.1 496,928 + BPHYT_RS22025 0.46 +0.5 497,109 - BPHYT_RS22025 0.57 -0.6 497,148 - BPHYT_RS22025 0.60 -0.1 497,342 + BPHYT_RS22025 0.72 +0.5 497,375 + BPHYT_RS22025 0.74 +1.0 497,640 + -0.5 497,681 + -0.6 497,789 + -1.2 497,963 - +2.2 498,200 - BPHYT_RS22030 0.23 -1.3 498,221 - BPHYT_RS22030 0.25 -0.3 498,263 - BPHYT_RS22030 0.29 -0.3 498,693 - BPHYT_RS22030 0.71 -0.4
Or see this region's nucleotide sequence