Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21565 and BPHYT_RS21570 are separated by 376 nucleotides BPHYT_RS21570 and BPHYT_RS21575 are separated by 567 nucleotides BPHYT_RS21575 and BPHYT_RS21580 overlap by 11 nucleotides BPHYT_RS21580 and BPHYT_RS21585 are separated by 8 nucleotides
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021
_RS21570
BPHYT_RS21575: BPHYT_RS21575 - hypothetical protein, at 399,589 to 399,789
_RS21575
BPHYT_RS21580: BPHYT_RS21580 - hypothetical protein, at 399,779 to 399,967
_RS21580
BPHYT_RS21585: BPHYT_RS21585 - short-chain dehydrogenase, at 399,976 to 400,737
_RS21585
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2 at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand at 398.389 kb on + strand at 398.390 kb on - strand at 398.495 kb on + strand, within BPHYT_RS21570 at 398.495 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.534 kb on - strand, within BPHYT_RS21570 at 398.934 kb on + strand, within BPHYT_RS21570 at 399.118 kb on + strand at 399.119 kb on - strand at 399.258 kb on - strand at 399.468 kb on + strand at 399.627 kb on + strand, within BPHYT_RS21575 at 399.827 kb on + strand, within BPHYT_RS21580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 397,499 - BPHYT_RS21565 0.27 -1.2 397,534 + BPHYT_RS21565 0.32 -2.2 397,534 + BPHYT_RS21565 0.32 +0.6 397,534 + BPHYT_RS21565 0.32 +0.9 397,693 + BPHYT_RS21565 0.58 +0.8 397,732 + BPHYT_RS21565 0.64 -0.1 397,732 + BPHYT_RS21565 0.64 -1.2 397,733 - BPHYT_RS21565 0.64 -0.4 397,948 + +1.6 397,948 + +0.5 397,948 + +2.6 397,949 - -0.6 397,997 - -0.2 398,167 + +1.2 398,168 - -0.6 398,168 - -1.2 398,170 - -0.7 398,389 + -1.4 398,390 - +0.3 398,495 + BPHYT_RS21570 0.24 +0.3 398,495 + BPHYT_RS21570 0.24 -1.4 398,533 + BPHYT_RS21570 0.29 -0.1 398,533 + BPHYT_RS21570 0.29 -1.2 398,534 - BPHYT_RS21570 0.29 +0.3 398,934 + BPHYT_RS21570 0.87 -0.8 399,118 + +0.3 399,119 - -0.8 399,258 - -1.4 399,468 + -0.0 399,627 + BPHYT_RS21575 0.19 -0.3 399,827 + BPHYT_RS21580 0.25 +0.5
Or see this region's nucleotide sequence