Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21375 and BPHYT_RS21380 are separated by 109 nucleotides BPHYT_RS21380 and BPHYT_RS21385 are separated by 206 nucleotides
BPHYT_RS21375: BPHYT_RS21375 - hypothetical protein, at 354,660 to 355,586
_RS21375
BPHYT_RS21380: BPHYT_RS21380 - nuclease PIN, at 355,696 to 357,282
_RS21380
BPHYT_RS21385: BPHYT_RS21385 - short-chain dehydrogenase, at 357,489 to 358,082
_RS21385
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -1
0
1 at 355.041 kb on + strand, within BPHYT_RS21375 at 355.108 kb on - strand, within BPHYT_RS21375 at 355.230 kb on + strand, within BPHYT_RS21375 at 355.230 kb on + strand, within BPHYT_RS21375 at 355.350 kb on + strand, within BPHYT_RS21375 at 355.351 kb on - strand, within BPHYT_RS21375 at 355.352 kb on + strand, within BPHYT_RS21375 at 355.353 kb on - strand, within BPHYT_RS21375 at 355.388 kb on + strand, within BPHYT_RS21375 at 355.537 kb on - strand at 355.581 kb on + strand at 355.581 kb on + strand at 355.585 kb on - strand at 355.697 kb on + strand at 355.697 kb on + strand at 355.877 kb on + strand, within BPHYT_RS21380 at 355.877 kb on + strand, within BPHYT_RS21380 at 355.877 kb on + strand, within BPHYT_RS21380 at 355.877 kb on + strand, within BPHYT_RS21380 at 355.878 kb on - strand, within BPHYT_RS21380 at 355.878 kb on - strand, within BPHYT_RS21380 at 355.937 kb on + strand, within BPHYT_RS21380 at 355.938 kb on - strand, within BPHYT_RS21380 at 356.168 kb on + strand, within BPHYT_RS21380 at 356.168 kb on + strand, within BPHYT_RS21380 at 356.196 kb on + strand, within BPHYT_RS21380 at 356.196 kb on + strand, within BPHYT_RS21380 at 356.309 kb on + strand, within BPHYT_RS21380 at 356.360 kb on + strand, within BPHYT_RS21380 at 356.601 kb on - strand, within BPHYT_RS21380 at 357.167 kb on - strand at 357.182 kb on + strand at 357.935 kb on - strand, within BPHYT_RS21385 at 358.082 kb on + strand at 358.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 355,041 + BPHYT_RS21375 0.41 +0.3 355,108 - BPHYT_RS21375 0.48 -1.0 355,230 + BPHYT_RS21375 0.61 -0.8 355,230 + BPHYT_RS21375 0.61 +0.3 355,350 + BPHYT_RS21375 0.74 -1.0 355,351 - BPHYT_RS21375 0.75 -0.4 355,352 + BPHYT_RS21375 0.75 -0.8 355,353 - BPHYT_RS21375 0.75 -1.1 355,388 + BPHYT_RS21375 0.79 -0.4 355,537 - +0.5 355,581 + -0.4 355,581 + +0.8 355,585 - -0.5 355,697 + +0.2 355,697 + -0.3 355,877 + BPHYT_RS21380 0.11 +0.1 355,877 + BPHYT_RS21380 0.11 -0.1 355,877 + BPHYT_RS21380 0.11 -0.2 355,877 + BPHYT_RS21380 0.11 -0.3 355,878 - BPHYT_RS21380 0.11 +0.1 355,878 - BPHYT_RS21380 0.11 +0.8 355,937 + BPHYT_RS21380 0.15 -0.5 355,938 - BPHYT_RS21380 0.15 +0.2 356,168 + BPHYT_RS21380 0.30 +0.5 356,168 + BPHYT_RS21380 0.30 -0.0 356,196 + BPHYT_RS21380 0.32 -0.4 356,196 + BPHYT_RS21380 0.32 -0.3 356,309 + BPHYT_RS21380 0.39 +0.6 356,360 + BPHYT_RS21380 0.42 +1.6 356,601 - BPHYT_RS21380 0.57 -0.2 357,167 - +0.0 357,182 + +0.0 357,935 - BPHYT_RS21385 0.75 -0.6 358,082 + -0.2 358,246 - -0.5
Or see this region's nucleotide sequence