Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19425 and BPHYT_RS19430 are separated by 18 nucleotides BPHYT_RS19430 and BPHYT_RS19435 are separated by 95 nucleotides BPHYT_RS19435 and BPHYT_RS19440 overlap by 4 nucleotides
BPHYT_RS19425: BPHYT_RS19425 - chromosome partitioning protein ParB, at 4,369,905 to 4,370,792
_RS19425
BPHYT_RS19430: BPHYT_RS19430 - cobyric acid synthase CobQ, at 4,370,811 to 4,371,602
_RS19430
BPHYT_RS19435: BPHYT_RS19435 - 16S rRNA methyltransferase, at 4,371,698 to 4,372,381
_RS19435
BPHYT_RS19440: BPHYT_RS19440 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 4,372,378 to 4,374,336
_RS19440
Position (kb) 4371
4372
4373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4371.747 kb on - strand at 4371.921 kb on - strand, within BPHYT_RS19435 at 4372.234 kb on - strand, within BPHYT_RS19435 at 4372.267 kb on - strand, within BPHYT_RS19435 at 4372.267 kb on - strand, within BPHYT_RS19435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,371,747 - -0.7 4,371,921 - BPHYT_RS19435 0.33 -2.0 4,372,234 - BPHYT_RS19435 0.78 -1.1 4,372,267 - BPHYT_RS19435 0.83 +1.9 4,372,267 - BPHYT_RS19435 0.83 -0.3
Or see this region's nucleotide sequence