Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18695 and BPHYT_RS18700 are separated by 35 nucleotides BPHYT_RS18700 and BPHYT_RS18705 are separated by 7 nucleotides BPHYT_RS18705 and BPHYT_RS18710 are separated by 11 nucleotides BPHYT_RS18710 and BPHYT_RS18715 are separated by 129 nucleotides
BPHYT_RS18695: BPHYT_RS18695 - ABC transporter, at 4,203,597 to 4,205,240
_RS18695
BPHYT_RS18700: BPHYT_RS18700 - hypothetical protein, at 4,205,276 to 4,205,533
_RS18700
BPHYT_RS18705: BPHYT_RS18705 - 5,10-methylenetetrahydrofolate reductase, at 4,205,541 to 4,206,371
_RS18705
BPHYT_RS18710: BPHYT_RS18710 - membrane protein, at 4,206,383 to 4,206,736
_RS18710
BPHYT_RS18715: BPHYT_RS18715 - adenosylhomocysteinase, at 4,206,866 to 4,208,287
_RS18715
Position (kb) 4205
4206
4207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4204.624 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.723 kb on + strand, within BPHYT_RS18695 at 4204.724 kb on - strand, within BPHYT_RS18695 at 4204.724 kb on - strand, within BPHYT_RS18695 at 4204.780 kb on + strand, within BPHYT_RS18695 at 4204.781 kb on - strand, within BPHYT_RS18695 at 4204.781 kb on - strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.840 kb on + strand, within BPHYT_RS18695 at 4204.931 kb on + strand, within BPHYT_RS18695 at 4204.931 kb on + strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.932 kb on - strand, within BPHYT_RS18695 at 4204.933 kb on + strand, within BPHYT_RS18695 at 4204.934 kb on - strand, within BPHYT_RS18695 at 4204.954 kb on - strand, within BPHYT_RS18695 at 4205.024 kb on - strand, within BPHYT_RS18695 at 4205.024 kb on - strand, within BPHYT_RS18695 at 4205.032 kb on + strand, within BPHYT_RS18695 at 4205.066 kb on - strand, within BPHYT_RS18695 at 4205.066 kb on - strand, within BPHYT_RS18695 at 4205.283 kb on + strand at 4205.283 kb on + strand at 4205.283 kb on + strand at 4205.284 kb on - strand at 4205.316 kb on + strand, within BPHYT_RS18700 at 4205.316 kb on + strand, within BPHYT_RS18700 at 4205.317 kb on - strand, within BPHYT_RS18700 at 4205.351 kb on - strand, within BPHYT_RS18700 at 4205.351 kb on - strand, within BPHYT_RS18700 at 4205.439 kb on - strand, within BPHYT_RS18700 at 4205.597 kb on - strand at 4205.597 kb on - strand at 4205.870 kb on - strand, within BPHYT_RS18705 at 4205.957 kb on - strand, within BPHYT_RS18705 at 4206.011 kb on + strand, within BPHYT_RS18705 at 4206.409 kb on + strand at 4206.410 kb on - strand at 4206.442 kb on - strand, within BPHYT_RS18710 at 4206.681 kb on + strand, within BPHYT_RS18710 at 4206.682 kb on - strand, within BPHYT_RS18710 at 4206.682 kb on - strand, within BPHYT_RS18710 at 4206.738 kb on + strand at 4206.738 kb on + strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.739 kb on - strand at 4206.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,204,624 + BPHYT_RS18695 0.62 +1.1 4,204,723 + BPHYT_RS18695 0.68 +0.1 4,204,723 + BPHYT_RS18695 0.68 -0.3 4,204,723 + BPHYT_RS18695 0.68 -1.2 4,204,724 - BPHYT_RS18695 0.69 -0.5 4,204,724 - BPHYT_RS18695 0.69 +1.1 4,204,780 + BPHYT_RS18695 0.72 +0.1 4,204,781 - BPHYT_RS18695 0.72 +0.6 4,204,781 - BPHYT_RS18695 0.72 -0.4 4,204,840 + BPHYT_RS18695 0.76 +0.2 4,204,840 + BPHYT_RS18695 0.76 -0.0 4,204,840 + BPHYT_RS18695 0.76 -0.6 4,204,840 + BPHYT_RS18695 0.76 -0.0 4,204,931 + BPHYT_RS18695 0.81 +0.3 4,204,931 + BPHYT_RS18695 0.81 +0.6 4,204,932 - BPHYT_RS18695 0.81 -1.5 4,204,932 - BPHYT_RS18695 0.81 -0.7 4,204,932 - BPHYT_RS18695 0.81 +1.0 4,204,933 + BPHYT_RS18695 0.81 +0.4 4,204,934 - BPHYT_RS18695 0.81 -0.1 4,204,954 - BPHYT_RS18695 0.83 -1.2 4,205,024 - BPHYT_RS18695 0.87 -0.1 4,205,024 - BPHYT_RS18695 0.87 -0.9 4,205,032 + BPHYT_RS18695 0.87 -1.0 4,205,066 - BPHYT_RS18695 0.89 -1.7 4,205,066 - BPHYT_RS18695 0.89 +0.5 4,205,283 + +0.8 4,205,283 + +2.0 4,205,283 + +0.1 4,205,284 - +0.4 4,205,316 + BPHYT_RS18700 0.16 -0.6 4,205,316 + BPHYT_RS18700 0.16 +0.6 4,205,317 - BPHYT_RS18700 0.16 -0.4 4,205,351 - BPHYT_RS18700 0.29 -0.0 4,205,351 - BPHYT_RS18700 0.29 -0.6 4,205,439 - BPHYT_RS18700 0.63 -0.2 4,205,597 - -0.9 4,205,597 - -2.6 4,205,870 - BPHYT_RS18705 0.40 -1.1 4,205,957 - BPHYT_RS18705 0.50 -1.8 4,206,011 + BPHYT_RS18705 0.57 -0.6 4,206,409 + -1.0 4,206,410 - +1.2 4,206,442 - BPHYT_RS18710 0.17 +0.0 4,206,681 + BPHYT_RS18710 0.84 -3.5 4,206,682 - BPHYT_RS18710 0.84 +0.4 4,206,682 - BPHYT_RS18710 0.84 -1.0 4,206,738 + -0.6 4,206,738 + -3.2 4,206,739 - -0.3 4,206,739 - -0.3 4,206,739 - -0.2 4,206,739 - -0.6 4,206,739 - -0.4 4,206,739 - -1.8 4,206,739 - +0.2 4,206,781 - -0.2
Or see this region's nucleotide sequence