Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14115 and BPHYT_RS14120 are separated by 113 nucleotides BPHYT_RS14120 and BPHYT_RS14125 are separated by 26 nucleotides BPHYT_RS14125 and BPHYT_RS14130 are separated by 28 nucleotides
BPHYT_RS14115: BPHYT_RS14115 - sensor histidine kinase, at 3,223,814 to 3,225,127
_RS14115
BPHYT_RS14120: BPHYT_RS14120 - chemotaxis protein CheY, at 3,225,241 to 3,225,942
_RS14120
BPHYT_RS14125: BPHYT_RS14125 - transcriptional regulator, at 3,225,969 to 3,226,673
_RS14125
BPHYT_RS14130: BPHYT_RS14130 - phosphate ABC transporter ATP-binding protein, at 3,226,702 to 3,227,550
_RS14130
Position (kb) 3225
3226 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3224.474 kb on - strand, within BPHYT_RS14115 at 3224.898 kb on + strand, within BPHYT_RS14115 at 3224.898 kb on + strand, within BPHYT_RS14115 at 3224.899 kb on - strand, within BPHYT_RS14115 at 3225.153 kb on + strand at 3225.291 kb on + strand at 3225.291 kb on + strand at 3225.336 kb on + strand, within BPHYT_RS14120 at 3225.336 kb on + strand, within BPHYT_RS14120 at 3225.638 kb on + strand, within BPHYT_RS14120 at 3225.714 kb on + strand, within BPHYT_RS14120 at 3225.845 kb on + strand, within BPHYT_RS14120 at 3225.846 kb on - strand, within BPHYT_RS14120 at 3225.971 kb on - strand at 3226.036 kb on + strand at 3226.147 kb on + strand, within BPHYT_RS14125 at 3226.148 kb on - strand, within BPHYT_RS14125 at 3226.679 kb on - strand at 3226.679 kb on - strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.688 kb on + strand at 3226.689 kb on - strand at 3226.724 kb on + strand at 3226.724 kb on + strand at 3226.799 kb on + strand, within BPHYT_RS14130 at 3226.799 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.803 kb on + strand, within BPHYT_RS14130 at 3226.805 kb on + strand, within BPHYT_RS14130 at 3226.805 kb on + strand, within BPHYT_RS14130 at 3226.814 kb on + strand, within BPHYT_RS14130 at 3226.868 kb on + strand, within BPHYT_RS14130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,224,474 - BPHYT_RS14115 0.50 +0.6 3,224,898 + BPHYT_RS14115 0.82 +0.1 3,224,898 + BPHYT_RS14115 0.82 +0.1 3,224,899 - BPHYT_RS14115 0.83 +0.2 3,225,153 + +0.7 3,225,291 + +0.5 3,225,291 + +1.0 3,225,336 + BPHYT_RS14120 0.14 -0.3 3,225,336 + BPHYT_RS14120 0.14 +3.1 3,225,638 + BPHYT_RS14120 0.57 +0.6 3,225,714 + BPHYT_RS14120 0.67 +0.3 3,225,845 + BPHYT_RS14120 0.86 +0.3 3,225,846 - BPHYT_RS14120 0.86 -0.3 3,225,971 - -1.3 3,226,036 + -0.1 3,226,147 + BPHYT_RS14125 0.25 +1.4 3,226,148 - BPHYT_RS14125 0.25 -1.8 3,226,679 - +0.1 3,226,679 - -1.1 3,226,688 + -0.2 3,226,688 + -0.7 3,226,688 + -0.6 3,226,688 + +0.4 3,226,689 - -1.3 3,226,724 + -0.6 3,226,724 + -0.4 3,226,799 + BPHYT_RS14130 0.11 -0.2 3,226,799 + BPHYT_RS14130 0.11 -0.3 3,226,803 + BPHYT_RS14130 0.12 -0.3 3,226,803 + BPHYT_RS14130 0.12 -2.1 3,226,803 + BPHYT_RS14130 0.12 -0.0 3,226,803 + BPHYT_RS14130 0.12 +0.2 3,226,803 + BPHYT_RS14130 0.12 -0.1 3,226,805 + BPHYT_RS14130 0.12 -0.4 3,226,805 + BPHYT_RS14130 0.12 -1.0 3,226,814 + BPHYT_RS14130 0.13 -0.5 3,226,868 + BPHYT_RS14130 0.20 -2.2
Or see this region's nucleotide sequence