Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07315 and BPHYT_RS07320 are separated by 89 nucleotides BPHYT_RS07320 and BPHYT_RS07325 are separated by 50 nucleotides BPHYT_RS07325 and BPHYT_RS07330 are separated by 276 nucleotides
BPHYT_RS07315: BPHYT_RS07315 - lipase, at 1,659,609 to 1,660,565
_RS07315
BPHYT_RS07320: BPHYT_RS07320 - dihydrodipicolinate synthetase, at 1,660,655 to 1,661,563
_RS07320
BPHYT_RS07325: BPHYT_RS07325 - GntR family transcriptional regulator, at 1,661,614 to 1,662,273
_RS07325
BPHYT_RS07330: BPHYT_RS07330 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,662,550 to 1,663,470
_RS07330
Position (kb) 1660
1661
1662 Strain fitness (log2 ratio) -2
-1
0
1 at 1659.988 kb on - strand, within BPHYT_RS07315 at 1660.140 kb on + strand, within BPHYT_RS07315 at 1660.140 kb on + strand, within BPHYT_RS07315 at 1660.140 kb on + strand, within BPHYT_RS07315 at 1660.141 kb on - strand, within BPHYT_RS07315 at 1660.141 kb on - strand, within BPHYT_RS07315 at 1660.270 kb on - strand, within BPHYT_RS07315 at 1660.387 kb on - strand, within BPHYT_RS07315 at 1660.490 kb on + strand at 1660.490 kb on + strand at 1660.491 kb on - strand at 1660.616 kb on - strand at 1661.408 kb on - strand, within BPHYT_RS07320 at 1661.907 kb on - strand, within BPHYT_RS07325 at 1662.361 kb on - strand at 1662.476 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,659,988 - BPHYT_RS07315 0.40 -0.2 1,660,140 + BPHYT_RS07315 0.55 -0.8 1,660,140 + BPHYT_RS07315 0.55 +1.1 1,660,140 + BPHYT_RS07315 0.55 +0.2 1,660,141 - BPHYT_RS07315 0.56 -1.1 1,660,141 - BPHYT_RS07315 0.56 -1.2 1,660,270 - BPHYT_RS07315 0.69 -0.4 1,660,387 - BPHYT_RS07315 0.81 -1.0 1,660,490 + -1.4 1,660,490 + +0.8 1,660,491 - -0.8 1,660,616 - +0.1 1,661,408 - BPHYT_RS07320 0.83 -0.5 1,661,907 - BPHYT_RS07325 0.44 -2.1 1,662,361 - +1.3 1,662,476 + -2.3
Or see this region's nucleotide sequence