Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06670 and BPHYT_RS06675 are separated by 20 nucleotides BPHYT_RS06675 and BPHYT_RS06680 are separated by 17 nucleotides BPHYT_RS06680 and BPHYT_RS06685 are separated by 14 nucleotides
BPHYT_RS06670: BPHYT_RS06670 - NADH:ubiquinone oxidoreductase subunit J, at 1,512,150 to 1,512,842
_RS06670
BPHYT_RS06675: BPHYT_RS06675 - NADH-quinone oxidoreductase subunit K, at 1,512,863 to 1,513,168
_RS06675
BPHYT_RS06680: BPHYT_RS06680 - NADH:ubiquinone oxidoreductase subunit L, at 1,513,186 to 1,515,273
_RS06680
BPHYT_RS06685: BPHYT_RS06685 - NADH:ubiquinone oxidoreductase subunit M, at 1,515,288 to 1,516,778
_RS06685
Position (kb) 1513
1514
1515
1516 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1512.830 kb on + strand at 1512.855 kb on + strand at 1513.166 kb on + strand at 1515.286 kb on + strand at 1516.149 kb on + strand, within BPHYT_RS06685 at 1516.149 kb on + strand, within BPHYT_RS06685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,512,830 + -1.2 1,512,855 + -2.1 1,513,166 + +1.5 1,515,286 + +3.0 1,516,149 + BPHYT_RS06685 0.58 -2.5 1,516,149 + BPHYT_RS06685 0.58 +1.5
Or see this region's nucleotide sequence