Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06660 and BPHYT_RS06665 are separated by 15 nucleotides BPHYT_RS06665 and BPHYT_RS06670 are separated by 194 nucleotides BPHYT_RS06670 and BPHYT_RS06675 are separated by 20 nucleotides BPHYT_RS06675 and BPHYT_RS06680 are separated by 17 nucleotides
BPHYT_RS06660: BPHYT_RS06660 - NADH-quinone oxidoreductase subunit H, at 1,510,387 to 1,511,451
_RS06660
BPHYT_RS06665: BPHYT_RS06665 - NADH-quinone oxidoreductase subunit I, at 1,511,467 to 1,511,955
_RS06665
BPHYT_RS06670: BPHYT_RS06670 - NADH:ubiquinone oxidoreductase subunit J, at 1,512,150 to 1,512,842
_RS06670
BPHYT_RS06675: BPHYT_RS06675 - NADH-quinone oxidoreductase subunit K, at 1,512,863 to 1,513,168
_RS06675
BPHYT_RS06680: BPHYT_RS06680 - NADH:ubiquinone oxidoreductase subunit L, at 1,513,186 to 1,515,273
_RS06680
Position (kb) 1512
1513 Strain fitness (log2 ratio) -2
-1
0
1 at 1511.466 kb on + strand at 1511.970 kb on + strand at 1511.975 kb on + strand at 1512.131 kb on + strand at 1512.830 kb on + strand at 1512.855 kb on + strand at 1513.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,511,466 + -1.6 1,511,970 + -0.9 1,511,975 + +1.0 1,512,131 + -1.5 1,512,830 + -1.2 1,512,855 + -2.1 1,513,166 + +1.5
Or see this region's nucleotide sequence