Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06650

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06640 and BPHYT_RS06645 are separated by 131 nucleotidesBPHYT_RS06645 and BPHYT_RS06650 overlap by 4 nucleotidesBPHYT_RS06650 and BPHYT_RS06655 are separated by 122 nucleotides BPHYT_RS06640: BPHYT_RS06640 - NADH-quinone oxidoreductase subunit D, at 1,504,735 to 1,505,988 _RS06640 BPHYT_RS06645: BPHYT_RS06645 - NADH dehydrogenase subunit E, at 1,506,120 to 1,506,605 _RS06645 BPHYT_RS06650: BPHYT_RS06650 - NADH dehydrogenase, at 1,506,602 to 1,507,930 _RS06650 BPHYT_RS06655: BPHYT_RS06655 - NADH dehydrogenase subunit G, at 1,508,053 to 1,510,386 _RS06655 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -1 0 1at 1505.993 kb on + strandat 1507.944 kb on + strandat 1507.952 kb on + strandat 1507.952 kb on + strandat 1507.952 kb on + strandat 1508.027 kb on + strandat 1508.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,505,993 + +0.1
1,507,944 + +0.8
1,507,952 + -0.7
1,507,952 + +0.1
1,507,952 + -0.5
1,508,027 + -1.1
1,508,035 + +0.1

Or see this region's nucleotide sequence