Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05435 and BPHYT_RS05440 are separated by 245 nucleotides BPHYT_RS05440 and BPHYT_RS05445 overlap by 2 nucleotides BPHYT_RS05445 and BPHYT_RS05450 are separated by 841 nucleotides
BPHYT_RS05435: BPHYT_RS05435 - ABC transporter substrate-binding protein, at 1,249,047 to 1,250,210
_RS05435
BPHYT_RS05440: BPHYT_RS05440 - hypothetical protein, at 1,250,456 to 1,250,650
_RS05440
BPHYT_RS05445: BPHYT_RS05445 - hypothetical protein, at 1,250,649 to 1,250,831
_RS05445
BPHYT_RS05450: BPHYT_RS05450 - AraC family transcriptional regulator, at 1,251,673 to 1,252,074
_RS05450
Position (kb) 1250
1251 Strain fitness (log2 ratio) -1
0
1 at 1249.877 kb on + strand, within BPHYT_RS05435 at 1249.993 kb on - strand, within BPHYT_RS05435 at 1250.151 kb on + strand at 1250.389 kb on - strand at 1250.611 kb on + strand, within BPHYT_RS05440 at 1250.611 kb on + strand, within BPHYT_RS05440 at 1250.632 kb on - strand at 1250.633 kb on + strand at 1250.634 kb on - strand at 1250.872 kb on + strand at 1251.470 kb on + strand at 1251.517 kb on + strand at 1251.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,249,877 + BPHYT_RS05435 0.71 -0.2 1,249,993 - BPHYT_RS05435 0.81 +0.9 1,250,151 + -1.6 1,250,389 - +0.1 1,250,611 + BPHYT_RS05440 0.79 -0.6 1,250,611 + BPHYT_RS05440 0.79 -0.6 1,250,632 - +1.4 1,250,633 + -0.9 1,250,634 - -0.2 1,250,872 + -0.7 1,251,470 + -1.4 1,251,517 + +0.2 1,251,610 - -0.1
Or see this region's nucleotide sequence