Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03705

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03700 and BPHYT_RS03705 overlap by 4 nucleotidesBPHYT_RS03705 and BPHYT_RS03710 are separated by 10 nucleotidesBPHYT_RS03710 and BPHYT_RS03715 are separated by 155 nucleotides BPHYT_RS03700: BPHYT_RS03700 - cell envelope biogenesis protein TonB, at 841,135 to 842,169 _RS03700 BPHYT_RS03705: BPHYT_RS03705 - biopolymer transporter ExbD, at 842,166 to 842,612 _RS03705 BPHYT_RS03710: BPHYT_RS03710 - protein tolQ, at 842,623 to 843,300 _RS03710 BPHYT_RS03715: BPHYT_RS03715 - 4-hydroxybenzoyl-CoA thioesterase, at 843,456 to 843,935 _RS03715 Position (kb) 842 843Strain fitness (log2 ratio) -1 0 1at 842.148 kb on - strandat 843.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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842,148 - -1.3
843,426 - +0.6

Or see this region's nucleotide sequence